@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1017: (2015-12-04 )
MAFESLTERLQGVFKNIRGKKKLSEKDVQEVTKEIRLALLEADVALPVVKTFIKHVRERAVGHEIIDTLDPTQQIVKIVNEELTDLLGAETSEIEKSPKIPTIIMMVGLQGAGKTTFAGKLANKLIKEDNARPMMIAADIYRPAAIDQLKTLGSQINVPVFDMGTNHSAVEIVTKGLEQARENRNDYVLIDTAGRLQIDATLMQELHDVKAIAQPNEILLVVDSMIGQEAANVAEEFNRQLSISGVVLTKIDGDTRGGAALSVREITGKPIKFTGTGEKITDIETFHPDRMASRILGMGDLLTLIERASQEYDEKRSMELAEKMRENTFDFNDFIDQLDQVQNMGPMEDLLKMLPGMANNPAMKNFKVDENEIARKRAIVSSMTPEERENPDLLNPSRRRRIAAGSGNTFVDVNKFIKDFNQAKQMMQGVMSGDMNKMMKKMGIDPNNLPKDMPGMDGMDMSNLEGMMGQNGMPDLSSLGGDMDFSQMFGGGLKGKVGAFAAKQSMKRMANKMKKAKKKRK

Atome Classification :

(46 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_B_17(3DM5)
SRP54_PYRFU
[Raw transfer]



GDP_B_17(3DM5)
SRP54_PYRFU
[Raw transfer]



GNP_B_2(1JPJ)
SRP54_THEAQ
[Raw transfer]



GDP_A_6(1O87)
SRP54_THEAQ
[Raw transfer]



GNP_B_5(1JPN)
SRP54_THEAQ
[Raw transfer]



GDP_B_17(3DM5)
SRP54_PYRFU
[Raw transfer]



GDP_D_17(4C7O)
FTSY_ECOLI
[Raw transfer]



GNP_A_6(1JPN)
SRP54_THEAQ
[Raw transfer]



GCP_B_6(1RJ9)
SRP54_THEAQ
[Raw transfer]



GDP_B_11(4C7O)
FTSY_ECOLI
[Raw transfer]



GDP_B_12(1O87)
SRP54_THEAQ
[Raw transfer]



GDP_B_2(2NG1)
SRP54_THEAQ
[Raw transfer]



GNP_A_12(2J7P)
SRP54_THEAQ
[Raw transfer]



GNP_B_20(2J7P)
SRP54_THEAQ
[Raw transfer]



GDP_A_7(1NG1)
SRP54_THEAQ
[Raw transfer]



GDP_C_2(3E70)
?
[Raw transfer]



GDP_C_2(3E70)
?
[Raw transfer]



CIT_B_4(1VMA)
?
[Raw transfer]



GCP_A_5(1RJ9)
SRP54_THEAQ
[Raw transfer]



GCP_D_17(1OKK)
SRP54_THEAQ
[Raw transfer]



GCP_D_17(1OKK)
FTSY_THEAQ
[Raw transfer]



GDP_D_17(4C7O)
SRP54_ECOLI
[Raw transfer]



GDP_B_11(4C7O)
SRP54_ECOLI
[Raw transfer]



GOL_B_14(3DMD)
?
[Raw transfer]



EDO_D_4(2NG1)
SRP54_THEAQ
[Raw transfer]



EDO_B_13(3NG1)
SRP54_THEAQ
[Raw transfer]



GNP_K_11(2Q9C)
FTSY_THEAQ
[Raw transfer]



GNP_T_20(2Q9B)
FTSY_THEAQ
[Raw transfer]



FMT_B_11(1O87)
SRP54_THEAQ
[Raw transfer]



GDP_D_2(2IYL)
FTSY_THEAQ
[Raw transfer]



ACY_B_7(1JPN)
SRP54_THEAQ
[Raw transfer]



ACY_A_9(1JPN)
SRP54_THEAQ
[Raw transfer]



GDP_D_18(4C7O)
SRP54_ECOLI
[Raw transfer]



EDO_A_2(2YHS)
FTSY_ECOLI
[Raw transfer]



EDO_B_14(3NG1)
SRP54_THEAQ
[Raw transfer]



EDO_A_2(2YHS)
FTSY_ECOLI
[Raw transfer]



EDO_A_12(3NG1)
SRP54_THEAQ
[Raw transfer]



GNP_B_20(2J7P)
FTSY_THEAQ
[Raw transfer]



GCP_B_6(1RJ9)
FTSY_THEAQ
[Raw transfer]



GNP_A_12(2J7P)
FTSY_THEAQ
[Raw transfer]
21 PsiBlast_CBE 93.3348% -87 - C9 -2XXA - SRP54_ECOLI -
1 PsiBlast_PDB 91.3248% -85 - C9 -2XXA - SRP54_ECOLI -
102 HHSearch 87.9947% -58 - C- -2XXA - SRP54_ECOLI -
23 PsiBlast_CBE 87.4242% -79 - C8 -2FFH - SRP54_THEAQ -
7 PsiBlast_PDB 87.2233% -80 - C9 -3DM5 Error SRP54_PYRFU
2 PsiBlast_PDB 87.2142% -78 - C8 -2FFH - SRP54_THEAQ -
101 HHSearch 86.6934% -79 - C9 -3DM5 Error SRP54_PYRFU
103 HHSearch 86.5343% -74 - C8 -2FFH - SRP54_THEAQ -
24 PsiBlast_CBE 86.2851% -94 - C9 -4C7O 4.0 SRP54_ECOLI
22 PsiBlast_CBE 86.2342% -77 - C8 -2FFH - SRP54_THEAQ -
25 PsiBlast_CBE 85.8633% -80 - C9 -3DM5 7.0 SRP54_PYRFU
4 PsiBlast_PDB 84.7251% -98 - C9 -4C7O 3.0 SRP54_ECOLI
6 PsiBlast_PDB 84.2440% -82 - C9 -3NDB - SRP54_METJA -
30 PsiBlast_CBE 83.4245%-102 - C9 -2C03 - SRP54_THEAQ -
9 PsiBlast_PDB 83.3945% -96 - C9 -1O87 7.3 SRP54_THEAQ
15 PsiBlast_PDB 83.3545%-100 - C9 -1FFH - SRP54_THEAQ -
27 PsiBlast_CBE 83.3345%-100 - C9 -2J45 - SRP54_THEAQ -
26 PsiBlast_CBE 82.7945%-101 - C9 -2J46 - SRP54_THEAQ -
12 PsiBlast_PDB 82.6745% -94 - C9 -1RY1 - SRP54_THEAQ -
29 PsiBlast_CBE 82.5745% -93 - C9 -1O87 7.2 SRP54_THEAQ
10 PsiBlast_PDB 82.5145% -94 - C9 -1JPJ 7.6 SRP54_THEAQ
31 PsiBlast_CBE 82.2245%-100 - C9 -1JPN 6.6 SRP54_THEAQ
36 PsiBlast_CBE 82.1344% -94 - C9 -1NG1 7.3 SRP54_THEAQ
20 PsiBlast_PDB 81.9044% -95 - C9 -2J7P 9.3 SRP54_THEAQ
33 PsiBlast_CBE 81.7844% -99 - C9 -2J7P 9.3 SRP54_THEAQ
17 PsiBlast_PDB 81.7244% -98 - C9 -3NG1 3.7 SRP54_THEAQ
32 PsiBlast_CBE 81.4844% -98 - C9 -3NG1 3.7 SRP54_THEAQ
11 PsiBlast_PDB 81.4545% -96 - C9 -1JPN 7.4 SRP54_THEAQ
18 PsiBlast_PDB 80.9444% -98 - C9 -1OKK 2.9 SRP54_THEAQ
37 PsiBlast_CBE 79.8644% -92 - C9 -2NG1 6.2 SRP54_THEAQ
8 PsiBlast_PDB 76.4844% -87 - C9 -1RJ9 9.4 SRP54_THEAQ
107 HHSearch 75.1633% -93 - C9 -3E70 6.9 ?
40 PsiBlast_CBE 72.7135% -89 - C9 -3DMD 3.7 ?
38 PsiBlast_CBE 71.6735% -88 - C9 -3E70 6.9 ?
115 HHSearch 71.1831% -82 - C9 -2YHS 2.9 FTSY_ECOLI
46 PsiBlast_CBE 66.2332% -76 - C9 -4C7O 7.4 FTSY_ECOLI
48 PsiBlast_CBE 65.2331% -73 - C9 -2YHS 2.9 FTSY_ECOLI
47 PsiBlast_CBE 64.9732% -72 - C9 -4C7O 7.0 FTSY_ECOLI
50 PsiBlast_CBE 63.9936% -94 - C9 -1VMA 3.9 ?
59 PsiBlast_CBE 60.6031% -77 - C9 -1OKK 7.4 FTSY_THEAQ
64 PsiBlast_CBE 60.1231% -71 - C9 -2J7P 2.9 FTSY_THEAQ
65 PsiBlast_CBE 59.6231% -77 - C9 -2J7P 2.9 FTSY_THEAQ
52 PsiBlast_CBE 59.0931% -72 - C9 -1RJ9 2.9 FTSY_THEAQ
60 PsiBlast_CBE 58.9531% -80 - C9 -2IYL 5.2 FTSY_THEAQ
56 PsiBlast_CBE 57.5231% -76 - C9 -2Q9B 4.5 FTSY_THEAQ
54 PsiBlast_CBE 55.8531% -74 - C9 -2Q9C 5.2 FTSY_THEAQ