@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1040: (2015-12-05 )
MATTTKTSTKKTNKKKSATAKKNLVIVESPAKAKTIEKYLGRNYKVVASVGHIRDLKKSSMSIDFENNYEPQYINIRGKGPLINDLKKEAKKAKKVYLASDPDREGEAISWHLAHILDLDKEDRNRVVFNEITKDAVKNAFVEPRQINMDLVDAQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIIDRENEIKAFQPEEYWTIDGSFKKGTRKFNATFYGLDGKKFKLSNNEDVKTVLKRIKTDEFLVEKVEKKERRRNAPLPYTTSSLQQDAANKINFRTRKTMMIAQQLYEGLSLGTAGHQGLITYMRTDSTRISPLAQNEATEFITNRFGANYSKHGNKVKNASGAQDAHEAIRPSSVNHTPESIAKYLDKDQLKLYTLIWNRFIASQMTAAVFDTMKVNLTQNGVTFIANGSQVKFDGYMAVYNDTDKNKMLPDMEEGESVKKVNTNPEQHFTQPPARFSEASLIKTLEENGVGRPSTYAPTLETIQKRYYVKLAAKRFEPTELGEIVNSLIVEFFPDIVDVTFTAEMEGKLDEVEIGNEQWQKIIDEFYKPFEKELAKAETEMEKIQIKDEPAGFDCELCGSPMVIKLGRYGKFYACSNFPECHNTKAITKEIGVICPICQKGQVIERKTKRNRIFYGCDRYPECEFTSWDKPIGRTCPKSNDFLVEKKVRGGGKQVVCSNEKCDYQEEKIK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

T3P_C_3(1CY8)
TOP1_ECOLI
[Raw transfer]



TMP_C_3(1CY2)
TOP1_ECOLI
[Raw transfer]



T3P_E_5(1CY6)
TOP1_ECOLI
[Raw transfer]



TMP_C_3(1CY1)
TOP1_ECOLI
[Raw transfer]



TMP_E_5(1CY4)
TOP1_ECOLI
[Raw transfer]



NACID_C_3(3PX7)
TOP1_ECOLI
[Raw transfer]
-
NACID_Y_1(1MW8)
TOP1_ECOLI
[Raw transfer]
-
NACID_B_2(3PX7)
TOP1_ECOLI
[Raw transfer]
-
24 HHSearch 93.7945% -57 - C2 -1MW9 - TOP1_ECOLI -
7 PsiBlast_PDB 92.1643% -65 - C2 -1CY4 3.3 TOP1_ECOLI
5 PsiBlast_PDB 91.8143% -60 - C2 -1CY8 4.0 TOP1_ECOLI
4 PsiBlast_PDB 91.6243% -66 - C2 -1CY6 4.0 TOP1_ECOLI
11 PsiBlast_PDB 91.6142% -68 - C2 -3PX7 14.5 TOP1_ECOLI
10 PsiBlast_PDB 91.3042% -58 - C2 -1MW9 - TOP1_ECOLI -
9 PsiBlast_PDB 91.1442% -58 - C2 -1MW8 10.9 TOP1_ECOLI
8 PsiBlast_PDB 91.1042% -59 - C2 -3PWT - TOP1_ECOLI -
1 PsiBlast_PDB 90.8243% -59 - C2 -1ECL - TOP1_ECOLI -
2 PsiBlast_PDB 90.7943% -61 - C2 -1CY1 3.7 TOP1_ECOLI
6 PsiBlast_PDB 90.5643% -60 - C2 -1CY0 - TOP1_ECOLI -
3 PsiBlast_PDB 90.3743% -60 - C2 -1CY2 4.1 TOP1_ECOLI
13 PsiBlast_PDB 89.5943% -57 - C2 -2GAJ - TOP1_THEMA -
12 PsiBlast_PDB 89.4843% -57 - C2 -2GAI - TOP1_THEMA -
47 Fugue 89.0143% -53 - C2 -2GAI - TOP1_THEMA -
22 HHSearch 88.5143% -50 * C2 *2GAI - TOP1_THEMA -
54 Fugue 82.3733% -34 - C2 -4DDU - RGYR_THEMA -
50 Fugue 77.9630% -37 - C2 -1GKU - RGYR_ARCFU -
14 PsiBlast_PDB 75.4029% -34 - C2 -4DDT - RGYR_THEMA -
17 PsiBlast_PDB 74.9929% -34 - C2 -4DDW - RGYR_THEMA -