@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1102: (2015-12-05 )
MKASHPKKIQKKLVQDLLSKKSLVGMALLGTVVQVCLTVYLPVLIGQAVDVVLSPHSMILLLPIMWKMIAVILANAIIQWINPLLYNRLIFHYVASLRKAVMEKLNLLPIAYLDKRGIGDLISRVTTDTEQLSNGLLMVFNQFFVGLLTILVTIFSMAKIDLLMLFLVLFLTPLSLFLARFIAKKSYHLYQNQTASRGRQTQFIEEMVSQESLIQAFSAQEESSNHFRTINQEYANFSQSAIFYSSTVNPSTRFINSLIYGFLAGIGALRIMSGAFSVGQLITFLNYVNQYTKPFNDISSVLSEMQSALACAERLYSILEESSPNITGTEKLDSSTVKGQIDFKNVVFGYNKSKPLLNGINLHIPAGAKVAIVGPTGAGKSTLINLLMRFYEVDGGNILLDGKPITDYEPSQLRQEIGMVLQETWLKSATIHDNIAYANPKASRDEVIEAAKAANADFFIKQLPNGYDTYLEDAGDSLSQGQCQLLTIARIFLKLPRILILDEATSSIDTRTEVLVQEAFQMLMKGRTSFIIAHRLSTIQTADIILVMVSGEIVEVGNHSELIAQKGIYYQMQNAQK

Atome Classification :

(47 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_B_7(2ONJ)
Y1866_STAAM
[Raw transfer]




ANP_A_8(2ONJ)
Y1866_STAAM
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ACP_A_4(4AYT)
ABCBA_HUMAN
[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ADP_A_3(3NHA)

[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ADP_A_2(3NHB)

[Raw transfer]




ADP_A_5(2HYD)
Y1866_STAAM
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ADP_B_2(2FFB)

[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]




ADP_B_6(2HYD)
Y1866_STAAM
[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_A_2(3NH9)

[Raw transfer]




AGS_A_3(4S0F)
?
[Raw transfer]




ADP_A_3(1JJ7)

[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ANP_A_2(4AYW)
ABCBA_HUMAN
[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




AGS_B_4(4S0F)
?
[Raw transfer]




1 PsiBlast_PDB 91.2839%-130 - C1 -3QF4 - Y288_THEMA -
4 PsiBlast_PDB 90.5939%-130 - C1 -4Q4J - Y288_THEMA -
3 PsiBlast_PDB 90.3739%-128 - C1 -4Q4H - Y288_THEMA -
2 PsiBlast_PDB 90.0539%-131 - C1 -4Q4A - Y288_THEMA -
117 HHSearch 83.1829%-118 - C1 -3WMG - ? -
116 HHSearch 81.8931%-112 - C1 -3ZDQ - ABCBA_HUMAN -
5 PsiBlast_PDB 80.6333%-117 - C1 -2HYD 4.6 Y1866_STAAM
6 PsiBlast_PDB 80.4633%-116 - C1 -2ONJ 5.9 Y1866_STAAM
104 Fugue 79.6130%-111 - C1 -3B60 - MSBA_SALTY -
22 PsiBlast_CBE 79.3733%-116 - C1 -2HYD 4.5 Y1866_STAAM
114 HHSearch 79.3130%-110 - C1 -3B60 - MSBA_SALTY -
21 PsiBlast_CBE 78.4533%-115 - C1 -2ONJ 6.0 Y1866_STAAM
16 PsiBlast_PDB 78.3732%-119 - C1 -4AYX 5.4 ABCBA_HUMAN
19 PsiBlast_PDB 77.0932%-121 - C1 -4AYW 5.2 ABCBA_HUMAN
36 PsiBlast_CBE 76.9933%-107 - C1 -4M1M - MDR1A_MOUSE -
17 PsiBlast_PDB 76.7332%-115 - C1 -3ZDQ - ABCBA_HUMAN -
45 PsiBlast_CBE 76.2332%-106 - C1 -4M2T - MDR1A_MOUSE -
25 PsiBlast_CBE 76.0732%-111 - C1 -3B60 - MSBA_SALTY -
35 PsiBlast_CBE 75.9833%-106 - C1 -4M1M - MDR1A_MOUSE -
15 PsiBlast_PDB 75.9332%-116 - C1 -4AYT 6.6 ABCBA_HUMAN
20 PsiBlast_PDB 64.0635% -88 - C1 -4S0F 3.6 ?
33 PsiBlast_CBE 63.6335% -94 - C1 -4S0F 1.8 ?
73 PsiBlast_CBE 59.1144%-124 - C1 -1XEF 6.2 HLYBP_ECOLX
74 PsiBlast_CBE 59.0444%-126 - C1 -1XEF 5.9 HLYBP_ECOLX
72 PsiBlast_CBE 59.0144%-127 - C1 -1XEF 6.5 HLYBP_ECOLX
53 PsiBlast_CBE 58.8944%-127 - C1 -2FF7 6.0
64 PsiBlast_CBE 58.4242%-113 - C1 -3NH9 6.2
70 PsiBlast_CBE 58.3844%-126 - C1 -2FFA 5.7
71 PsiBlast_CBE 58.3144%-124 - C1 -1XEF 6.7
66 PsiBlast_CBE 58.1844%-128 - C1 -2FGJ 6.1
55 PsiBlast_CBE 57.7744%-127 - C1 -2PMK 6.7
57 PsiBlast_CBE 57.7144%-127 - C1 -2FGK 6.5
59 PsiBlast_CBE 57.6744%-129 - C1 -2FGK 6.3 HLYBP_ECOLX
62 PsiBlast_CBE 57.3942%-115 - C1 -3NHB 6.5
61 PsiBlast_CBE 57.3144%-124 - C1 -2FFB 5.7
67 PsiBlast_CBE 57.1444%-122 - C1 -2FGJ 6.1 HLYBP_ECOLX
56 PsiBlast_CBE 57.1244%-128 - C1 -3B5J 6.0
69 PsiBlast_CBE 56.9544%-121 - C1 -2FGJ 6.3 HLYBP_ECOLX
58 PsiBlast_CBE 56.9244%-125 - C1 -2FGK 5.8 HLYBP_ECOLX
124 HHSearch 56.9043%-120 - C1 -2FF7 6.1
60 PsiBlast_CBE 56.8944%-126 - C1 -2FGK 6.5 HLYBP_ECOLX
68 PsiBlast_CBE 56.8744%-123 - C1 -2FGJ 6.6 HLYBP_ECOLX
63 PsiBlast_CBE 56.4742%-113 - C1 -3NHA 6.4
84 PsiBlast_CBE 54.0637%-114 - C1 -1JJ7 6.3
120 HHSearch 51.5135%-105 - C1 -3VX4 6.9 ?
86 PsiBlast_CBE 51.5038%-107 - C1 -3VX4 6.9 ?
122 HHSearch 48.1638%-112 - C1 -1MV5 6.3 LMRA_LACLA