@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1103: (2015-12-05 )
MKRLTYYFKGYIKETIFGPLFKLLEASFELLVPIVIAKMIDETIPRGDRSSLLLQIGLIFFLAAVGVVVAITAQYYSSKAAVGYTRQLTEDLYQKVMSLGKKDRDELGTASLITRLTADTFQIQTGLNQFLRLFLRAPIIVFGAIIMAFSISPSLTIWFLVMVVTLFIIVFVMSRLLNPIYLKIRTSTDYLVKLTRQQLQGVRVIRAFNQVDRESEAFNDINYHYTNLQLKAGRLSSLVTPLTFLVVNITLVVIIWRGNLNIANHLLSQGMLVALINYLLQILVELLKMTMLVTSLNQSYISAKRIIAVFERPSEIIDDKLEPKYSNKALEVQEMAFSYPNSSEKALSDITFSMNVGETLGIIGGTGSGKSTLVNLLLHIYKVQEGDIDIYHQGKSPDTISNWRTLVRVVPQNAQLFKGTIRSNLSLGLGKVSEEKLWTALEIAQASDFVKEKDGQLDAPVESFGRNFSGGQRQRLTIARALVQDKIPFLILDDATSALDYLTEARLFKAITKHFNQTNLIIVSQRINSIQNADRILLLDKGKQVGFDNHQSLLAHNKVYKSIYHSQNFKEEE

Atome Classification :

(41 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ADP_A_2(3NHB)

[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ADP_A_3(3NHA)

[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]




ADP_B_2(2FFB)

[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_A_2(3NH9)

[Raw transfer]




2 PsiBlast_PDB 89.6134%-113 - C4 -4Q4A - ? -
1 PsiBlast_PDB 88.4934%-112 - C4 -3QF4 - ? -
4 PsiBlast_PDB 87.6834%-111 - C4 -4Q4J - ? -
3 PsiBlast_PDB 86.3734%-110 - C4 -4Q4H - ? -
61 HHSearch 80.4425%-100 - C3 -3B60 - MSBA_SALTY -
81 Fugue 79.1624% -95 * C3 *3B60 - MSBA_SALTY -
10 PsiBlast_PDB 78.5825%-110 - C4 -2HYD - Y1866_STAAM -
11 PsiBlast_PDB 78.1425%-111 - C4 -2ONJ - Y1866_STAAM -
9 PsiBlast_PDB 73.6925% -92 - C4 -3B60 - MSBA_SALTY -
63 HHSearch 73.2024% -99 - C4 -3ZDQ - ABCBA_HUMAN -
14 PsiBlast_PDB 71.9125% -97 - C4 -4AYX - ABCBA_HUMAN -
64 HHSearch 71.6122%-104 - C4 -3WMG - ? -
15 PsiBlast_PDB 71.6025% -98 - C4 -3ZDQ - ABCBA_HUMAN -
13 PsiBlast_PDB 70.3525% -96 - C4 -4AYT - ABCBA_HUMAN -
17 PsiBlast_PDB 69.6825% -99 - C4 -4AYW - ABCBA_HUMAN -
18 PsiBlast_PDB 69.2227%-117 - C4 -4RY2 - ? -
12 PsiBlast_PDB 69.2225%-108 - C4 -4A82 - Y1866_STAAM -
19 PsiBlast_PDB 68.2627%-103 - C4 -4S0F - ? -
84 Fugue 64.9422%-100 - C3 -4F4C - PGP1_CAEEL -
16 PsiBlast_PDB 57.9538% -98 - C4 -4Q7K - ? -
35 PsiBlast_CBE 56.5837% -82 - C4 -2FGJ 6.6 HLYBP_ECOLX
40 PsiBlast_CBE 56.3337% -81 - C4 -1XEF 6.4 HLYBP_ECOLX
36 PsiBlast_CBE 55.8437% -76 - C4 -2FGJ 6.2 HLYBP_ECOLX
33 PsiBlast_CBE 55.7037% -83 - C4 -2FGJ 6.1
41 PsiBlast_CBE 55.6837% -81 - C4 -1XEF 6.0 HLYBP_ECOLX
34 PsiBlast_CBE 55.2637% -80 - C4 -2FGJ 6.2 HLYBP_ECOLX
73 HHSearch 54.8937% -92 - C4 -2FF7 6.1
43 PsiBlast_CBE 54.8037% -82 - C4 -2FGK 6.7
45 PsiBlast_CBE 54.2237% -81 - C4 -2FGK 6.4 HLYBP_ECOLX
39 PsiBlast_CBE 53.5737% -84 - C4 -1XEF 6.4 HLYBP_ECOLX
44 PsiBlast_CBE 52.9537% -79 - C4 -2FGK 5.8 HLYBP_ECOLX
46 PsiBlast_CBE 52.9037% -81 - C4 -2FGK 6.6 HLYBP_ECOLX
50 PsiBlast_CBE 52.3132% -73 - C4 -3NH9 6.2
38 PsiBlast_CBE 51.9037% -78 - C4 -1XEF 6.2
48 PsiBlast_CBE 51.4132% -74 - C4 -3NHB 6.5
32 PsiBlast_CBE 50.9037% -81 - C4 -2PMK 6.8
49 PsiBlast_CBE 50.0132% -75 - C4 -3NHA 6.5
30 PsiBlast_CBE 49.9237% -81 - C4 -2FF7 6.1
47 PsiBlast_CBE 49.5137% -78 - C4 -2FFB 6.1
37 PsiBlast_CBE 49.4837% -81 - C4 -2FFA 6.1
42 PsiBlast_CBE 48.6737% -79 - C4 -3B5J 6.6