@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1106: (2015-12-05 )
MIFDKDNFKEFDQELWQAIHDEEIRQQNNIELIASENVVSKAVMAAQGSVLTNKYAEGYPSHRYYGGTDCVDVVESLAIERAKTLFNAEFANVQPHSGSQANAAAYMALIEPGDTVLGMDLAAGGHLTHGASVSFSGKTYHFVSYSVDPKTEMLDYDNILKIAQETQPKLIVAGASAYSRIIDFEKFRQIADAVDAYLMVDMAHIAGLVASGHHPSPIPYAHVTTTTTHKTLRGPRGGLILTNDEAIAKKINSAVFPGLQGGPLEHVIAAKAVALKEALDPSFKIYGEDIIKNAQAMAKVFKEDDDFHLISDGTDNHLFLVDVTKVIENGKKAQNVLEEVNITLNKNSIPFERLSPFKTSGIRIGTPAITSRGMGVEESRRIAELMIKALKNHENQDILTEVRQEIKSLTDAFPLYEN

Atome Classification :

(71 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLG_C_6(4WXF)
GLYA_STRT1
[Raw transfer]




2BO_C_6(4WXG)
GLYA_STRT1
[Raw transfer]




FON_H_8(1KL2)
?
[Raw transfer]




ALO_A_3(2W7G)
?
[Raw transfer]




GLY_A_2(2VMQ)
?
[Raw transfer]




GLY_A_2(2VMO)
?
[Raw transfer]




PLG_A_4(1RVY)
GLYC_RABIT
[Raw transfer]




ALO_A_3(2VMX)
?
[Raw transfer]




PLP_C_3(1YJS)
?
[Raw transfer]




GOL_B_5(4PVF)
GLYM_HUMAN
[Raw transfer]




GOL_A_3(4PVF)
GLYM_HUMAN
[Raw transfer]




PLP_A_3(2W7K)
?
[Raw transfer]




PLP_A_3(2VIB)
?
[Raw transfer]




PLP_A_2(2W7G)
?
[Raw transfer]




PLP_A_2(2W7L)
?
[Raw transfer]




PLP_A_3(2VMT)
?
[Raw transfer]




PLP_A_3(2W7M)
?
[Raw transfer]




PLP_A_3(2W7H)
?
[Raw transfer]




PLP_A_3(2W7E)
?
[Raw transfer]




PLP_A_3(2VMO)
?
[Raw transfer]




PLP_C_3(1KKP)
?
[Raw transfer]




PLP_A_3(2VMW)
?
[Raw transfer]




PLP_A_2(2VMX)
?
[Raw transfer]




PLP_A_6(1RV3)
GLYC_RABIT
[Raw transfer]




PLP_A_3(2W7J)
?
[Raw transfer]




PLP_C_3(1YJZ)
?
[Raw transfer]




PLP_A_3(2VI9)
?
[Raw transfer]




PLP_C_3(1KL1)
?
[Raw transfer]




PLP_A_3(2W7F)
?
[Raw transfer]




PLP_A_3(2VMP)
?
[Raw transfer]




PLP_A_6(1RV3)
GLYC_RABIT
[Raw transfer]




PLP_A_3(2VIA)
?
[Raw transfer]




PLP_A_3(2VMQ)
?
[Raw transfer]




PLP_A_2(2VI8)
?
[Raw transfer]




PLP_A_2(2VMV)
?
[Raw transfer]




PLP_A_2(2W7D)
?
[Raw transfer]




PLP_A_9(1RV4)
GLYC_RABIT
[Raw transfer]




PLP_A_2(2VI8)
?
[Raw transfer]




PLP_A_3(1KKJ)
?
[Raw transfer]




PLP_A_2(2VMR)
?
[Raw transfer]




PLP_B_9(1RVU)
GLYC_RABIT
[Raw transfer]




PLP_A_2(2VMN)
?
[Raw transfer]




PLP_A_3(2VMU)
?
[Raw transfer]




PLP_A_3(2VMZ)
?
[Raw transfer]




PLP_B_6(2DKJ)
GLYA_THET8
[Raw transfer]




PLP_A_3(2VMS)
?
[Raw transfer]




PLP_B_4(1CJ0)
GLYC_RABIT
[Raw transfer]




PLP_B_5(1RVY)
GLYC_RABIT
[Raw transfer]




PLP_A_2(2W7I)
?
[Raw transfer]




PLP_A_5(2DKJ)
GLYA_THET8
[Raw transfer]




PLP_A_3(1CJ0)
GLYC_RABIT
[Raw transfer]




PLP_A_5(2DKJ)
GLYA_THET8
[Raw transfer]




PLP_A_7(1RVU)
GLYC_RABIT
[Raw transfer]




PLP_B_7(1RV3)
GLYC_RABIT
[Raw transfer]




PLP_B_11(1RV4)
GLYC_RABIT
[Raw transfer]




PLP_C_3(1YJY)
?
[Raw transfer]




PLP_A_2(1BJ4)
GLYC_HUMAN
[Raw transfer]




FON_G_7(1KL2)
?
[Raw transfer]




FFO_B_8(2VMY)
?
[Raw transfer]




PLP_A_2(1BJ4)
GLYC_HUMAN
[Raw transfer]




FFO_A_6(2VMY)
?
[Raw transfer]




PLP_A_2(3G8M)
GLYA_ECOLI
[Raw transfer]




25 PsiBlast_CBE 93.4679% -92 - C1 -4WXB - GLYA_STRT1 -
24 PsiBlast_CBE 93.4179% -89 - C1 -4WXB - GLYA_STRT1 -
21 PsiBlast_CBE 92.6479% -84 - C1 -4WXG 6.5 GLYA_STRT1
1 PsiBlast_PDB 92.3679% -84 - C1 -4WXG - GLYA_STRT1 -
23 PsiBlast_CBE 92.2179% -86 - C1 -4WXB - GLYA_STRT1 -
2 PsiBlast_PDB 92.1879% -85 - C1 -4WXF - GLYA_STRT1 -
22 PsiBlast_CBE 92.0379% -84 - C1 -4WXF 5.4 GLYA_STRT1
3 PsiBlast_PDB 91.1379% -85 - C1 -4WXB - GLYA_STRT1 -
9 PsiBlast_PDB 89.7961% -91 - C- -2VGS - ? -
10 PsiBlast_PDB 88.9461% -91 - C- -2VGT - ? -
13 PsiBlast_PDB 88.5861% -91 - C- -2VGU - ? -
12 PsiBlast_PDB 88.4761% -89 - C- -2VGW - ? -
11 PsiBlast_PDB 86.8261% -91 - C- -2VGV - ? -
53 PsiBlast_CBE 86.7858% -81 - C1 -3PGY - GLYA_STAAC -
52 PsiBlast_CBE 85.9858% -84 - C1 -3PGY - GLYA_STAAC -
18 PsiBlast_PDB 85.8661% -79 - C1 -2W7D 4.5 ?
49 PsiBlast_CBE 85.5961% -77 - C1 -2VMV 4.3 ?
31 PsiBlast_CBE 85.4861% -77 - C1 -2VMQ 4.3 ?
41 PsiBlast_CBE 85.4461% -77 - C1 -2VMT 4.6 ?
32 PsiBlast_CBE 85.3261% -77 - C1 -2VMP 4.3 ?
47 PsiBlast_CBE 85.0461% -77 - C1 -2VMX 4.1 ?
20 PsiBlast_PDB 84.9661% -76 - C1 -2W7F 3.3 ?
14 PsiBlast_PDB 84.8461% -78 - C1 -2VI8 4.4 ?
34 PsiBlast_CBE 84.7661% -77 - C1 -2VMN 4.5 ?
35 PsiBlast_CBE 84.7061% -77 - C1 -2W7M 4.2 ?
33 PsiBlast_CBE 84.6661% -77 - C1 -2VMO 3.7 ?
27 PsiBlast_CBE 84.6161% -78 - C1 -2W7H 2.9 ?
28 PsiBlast_CBE 84.4961% -76 - C1 -2W7G 3.4 ?
44 PsiBlast_CBE 84.4261% -78 - C1 -2VMZ 3.1 ?
15 PsiBlast_PDB 84.4161% -77 - C1 -2VIB 3.8 ?
4 PsiBlast_PDB 84.3961% -76 - C1 -1KKJ 3.2 ?
48 PsiBlast_CBE 84.3661% -77 - C1 -2VMW 4.4 ?
19 PsiBlast_PDB 84.3661% -76 - C1 -2W7E 4.3 ?
16 PsiBlast_PDB 84.3661% -77 - C1 -2VIA 4.0 ?
43 PsiBlast_CBE 84.3061% -78 - C1 -2VMR 4.4 ?
17 PsiBlast_PDB 84.2361% -77 - C1 -2VI9 3.9 ?
5 PsiBlast_PDB 84.1961% -76 - C1 -1KKP 4.5 ?
40 PsiBlast_CBE 84.1061% -76 - C1 -2VMU 4.1 ?
38 PsiBlast_CBE 84.0261% -76 - C1 -2W7J 4.3 ?
46 PsiBlast_CBE 83.7761% -78 - C1 -2VMY 4.1 ?
6 PsiBlast_PDB 83.7261% -77 - C1 -1KL1 4.5 ?
108 HHSearch 83.6960% -77 - C1 -2VI8 4.4 ?
7 PsiBlast_PDB 83.6861% -77 - C1 -1KL2 4.0 ?
29 PsiBlast_CBE 83.5061% -79 - C1 -1YJZ 3.8 ?
30 PsiBlast_CBE 83.3961% -79 - C1 -1YJY 4.2 ?
42 PsiBlast_CBE 83.1461% -77 - C1 -2VMS 3.1 ?
8 PsiBlast_PDB 83.1461% -77 - C1 -1YJS 4.4 ?
45 PsiBlast_CBE 82.7661% -76 - C1 -2VMY 4.1 ?
39 PsiBlast_CBE 82.3961% -77 - C1 -2W7I 3.0 ?
37 PsiBlast_CBE 82.3761% -76 - C1 -2W7K 4.1 ?
103 HHSearch 82.1259% -75 - C1 -2DKJ 3.2 GLYA_THET8
36 PsiBlast_CBE 82.1261% -76 - C1 -2W7L 4.4 ?
26 PsiBlast_CBE 81.8661% -76 - C1 -1KL2 5.0 ?
51 PsiBlast_CBE 81.8359% -75 - C1 -2DKJ 3.2 GLYA_THET8
50 PsiBlast_CBE 81.1759% -75 - C1 -2DKJ 3.1 GLYA_THET8
64 PsiBlast_CBE 79.6956% -77 - C1 -3G8M 4.3 GLYA_ECOLI
89 PsiBlast_CBE 76.6541% -77 - C1 -1RVY 3.6 GLYC_RABIT
124 Fugue 76.3744% -75 - C1 -1BJ4 2.7 GLYC_HUMAN
90 PsiBlast_CBE 76.1741% -78 - C1 -1RVY 2.7 GLYC_RABIT
101 HHSearch 75.6645% -72 - C1 -1RV3 2.8 GLYC_RABIT
91 PsiBlast_CBE 75.6441% -76 - C1 -1RVU 3.3 GLYC_RABIT
92 PsiBlast_CBE 74.9841% -76 - C1 -1RVU 2.5 GLYC_RABIT
93 PsiBlast_CBE 74.8641% -77 - C1 -1RV4 3.8 GLYC_RABIT
83 PsiBlast_CBE 74.7141% -80 - C1 -1CJ0 4.7 GLYC_RABIT
94 PsiBlast_CBE 74.6741% -77 - C1 -1RV4 3.5 GLYC_RABIT
96 PsiBlast_CBE 74.2041% -75 - C1 -1RV3 2.8 GLYC_RABIT
88 PsiBlast_CBE 74.1141% -75 - C1 -1BJ4 2.7 GLYC_HUMAN
84 PsiBlast_CBE 73.7841% -80 - C1 -1CJ0 4.2 GLYC_RABIT
95 PsiBlast_CBE 73.5341% -75 - C1 -1RV3 3.7 GLYC_RABIT
81 PsiBlast_CBE 69.8842% -72 - C1 -4PVF 3.3 GLYM_HUMAN
82 PsiBlast_CBE 68.8442% -68 - C1 -4PVF 3.0 GLYM_HUMAN