@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1158: (2015-12-05 )
MISRKVALVTGASAGFGAAIVTKLVSDGYSVIGCARRMDKLKCFGEKFSEGYFYPLQMDITSRESVDKALESLPKNLQSIDLLVNNAGLALGLDKSYEADFEDWMTMINTNVVGLIYLTRCILPKMVEVNRGLIINLGSTAGTIPYPGANVYGASKAFVKQFSLNLRADLAGTKIRVTNLEPGLCEGTEFSTVRFKGDHKRVEKLYEGAHAIQAEDIANTVSWVASQPEHININRIEIMPVSQTYGPQPVYRD

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_B_7(2JAP)
?
[Raw transfer]




NDP_C_9(2JAP)
?
[Raw transfer]




NAP_B_6(3RKU)
YM71_YEAST
[Raw transfer]




NDP_D_11(2JAP)
?
[Raw transfer]




NAP_D_8(3RKU)
YM71_YEAST
[Raw transfer]




NAP_C_7(3RKU)
YM71_YEAST
[Raw transfer]




NAP_A_5(3RKU)
YM71_YEAST
[Raw transfer]




NDP_A_5(2JAP)
?
[Raw transfer]




NDP_A_5(2JAH)
?
[Raw transfer]




23 PsiBlast_CBE 88.4451%-106 - C1 -3ASV - ? -
21 PsiBlast_CBE 88.2951%-109 - C1 -3ASV - ? -
2 PsiBlast_PDB 87.0151%-105 - C1 -3ASV - ? -
22 PsiBlast_CBE 86.7451%-105 - C1 -3ASV - ? -
25 PsiBlast_CBE 86.6951%-106 - C1 -3ASV - ? -
24 PsiBlast_CBE 85.8851%-104 - C1 -3ASV - ? -
1 PsiBlast_PDB 85.0151%-113 - C1 -3ASU - ? -
3 PsiBlast_PDB 80.0748%-105 - C1 -2NWQ - ? -
4 PsiBlast_PDB 78.5737% -99 - C1 -3RKU 13.7 YM71_YEAST
28 PsiBlast_CBE 78.2037%-101 - C1 -3RKU 14.1 YM71_YEAST
26 PsiBlast_CBE 77.6537%-102 - C1 -3RKU 14.0 YM71_YEAST
27 PsiBlast_CBE 77.1237% -98 - C1 -3RKU 14.0 YM71_YEAST
7 PsiBlast_PDB 69.8834%-106 - C1 -1XG5 - DHR11_HUMAN -
14 PsiBlast_PDB 69.5230%-110 - C1 -4I08 - FABG_VIBCH -
32 PsiBlast_CBE 69.1034%-103 - C1 -1XG5 - DHR11_HUMAN -
33 PsiBlast_CBE 68.9034%-107 - C1 -1XG5 - DHR11_HUMAN -
51 PsiBlast_CBE 68.8331%-114 - C1 -4BO6 - FABG_PSEAE -
29 PsiBlast_CBE 68.3635%-101 - C1 -2JAP 13.3 ?
6 PsiBlast_PDB 68.1634%-102 - C1 -2JAH 12.5 ?
12 PsiBlast_PDB 67.9630%-110 - C1 -3RSH - FABG_VIBCH -
5 PsiBlast_PDB 66.5235%-100 - C1 -2JAP 13.0 ?
31 PsiBlast_CBE 66.2535%-100 - C1 -2JAP 13.2 ?
30 PsiBlast_CBE 65.4635% -98 - C1 -2JAP 12.9 ?