@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1170: (2015-12-05 )
MVKQVFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPTGEDRFAIISGQKKMFDFEEGYFYPAKESIDFYHHYKEDLALLAEMGFKTYRMSIAWTRIFPKGDELYPNEAGLRFYENIFKECRKYGIEPLVTITHFDCPIYLIKHYGGWRSRKMIGFYERLVRALFTRFKGLVKYWLTFNEINMILHAPFMGAGLYFEDGENQEQIKYQAAHHELVASAIAVKIAHEVDPNNQIGCMLAAGQYYPNTCHPQDYWASMQKNRENYFFIDVQTRGKYPNYAKKYFEHLGISIQMTAEDLALLRDYTVDFISFSYYSSRVASGNPTVSEQVQENIFASLKNPYLKSSEWGWQIDPLGLRITLNAIWDRYQKPMFIVENGLGAVDIPDENGYVEDDYRIDYLRQHIAAMRDAIYVDGVNLIGYTTWGCIDLVSAGTGEMEKRYGFIYVDRNNKGEGTLKRYKKKSFYWYKKVIASNGSQIE

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BG6_A_3(4F66)
?
[Raw transfer]




6GB_A_3(4GPN)
?
[Raw transfer]




P53_A_2(4F79)
?
[Raw transfer]




BG6_B_7(4F66)
?
[Raw transfer]




1FT_B_3(4IPN)
?
[Raw transfer]




6GB_B_5(4GPN)
?
[Raw transfer]




BGP_A_3(4PBG)
LACG_LACLL
[Raw transfer]




BGP_B_4(4PBG)
LACG_LACLL
[Raw transfer]




GOL_A_3(4IPL)
?
[Raw transfer]




1FT_E_4(4IPN)
?
[Raw transfer]




CTS_B_6(2CBU)
BGLA_THEMA
[Raw transfer]




YLL_B_6(2JAL)
BGLA_THEMA
[Raw transfer]




BGC_A_2(3QOM)
?
[Raw transfer]




2 PsiBlast_PDB 97.5652%-102 - C2 -4IPN 3.6 ?
21 PsiBlast_CBE 97.0152%-100 - C2 -4IPN 2.2 ?
1 PsiBlast_PDB 96.6052%-101 - C2 -4IPL 2.6 ?
22 PsiBlast_CBE 95.2552% -92 - C2 -4F66 5.1 ?
9 PsiBlast_PDB 95.2248% -97 - C2 -4GZE - ? -
6 PsiBlast_PDB 95.1651% -91 - C2 -3PN8 - ? -
3 PsiBlast_PDB 94.6852% -93 - C2 -4F66 5.7 ?
5 PsiBlast_PDB 94.0952% -93 - C2 -4GPN 4.0 ?
4 PsiBlast_PDB 93.9352% -93 - C2 -4F79 5.6 ?
23 PsiBlast_CBE 93.9152% -97 - C2 -4GPN 6.0 ?
8 PsiBlast_PDB 92.9948% -95 - C2 -3QOM 2.7 ?
25 PsiBlast_CBE 91.9248% -92 - C2 -2XHY - BGLA_ECOLI -
26 PsiBlast_CBE 91.7848% -91 - C2 -2XHY - BGLA_ECOLI -
101 HHSearch 91.7749% -94 - C2 -2XHY - BGLA_ECOLI -
24 PsiBlast_CBE 91.2948% -92 - C2 -2XHY - BGLA_ECOLI -
7 PsiBlast_PDB 90.7048% -91 - C2 -2XHY - BGLA_ECOLI -
19 PsiBlast_PDB 79.1633% -91 - C2 -4HZ7 - ? -
94 PsiBlast_CBE 78.8833% -87 - C2 -4PBG 4.8 LACG_LACLL
47 PsiBlast_CBE 78.8334% -88 - C2 -2PBG - LACG_LACLL -
46 PsiBlast_CBE 78.7534% -92 - C2 -1PBG - LACG_LACLL -
95 PsiBlast_CBE 78.2633% -87 - C2 -4PBG 5.0 LACG_LACLL
62 PsiBlast_CBE 75.6631% -84 - C2 -2JAL 3.1 BGLA_THEMA
82 PsiBlast_CBE 74.7631% -83 - C2 -2CBU 4.3 BGLA_THEMA