@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1178: (2015-12-06 )
MTNPIIAFKNVSKVFEDSNTVVLKDINFELEEGKFYTLLGASGSGKSTILNIIAGLLEASTGDIYLDGKRINDVPTNKRDVHTVFQNYALFPHMTVFENVAFPLKLKKMDKKEIQKRVQETLKMVRLEGFEKRAIQKLSGGQRQRVAIARAIINQPKVVLLDEPLSALDLKLRTEMQYELRELQQRLGITFVFVTHDQEEALAMSDWIFVMNEGEIVQSGTPVDIYDEPINHFVATFIGESNILSGKMIEDYLVEFNGKRFEAVDGGMRPNESVQVVIRPEDLQITLPDEGKLQVKVDTQLFRGVHYEIIAYDDLGNEWMIHSTRKAIEGEVIGLDFTPEDIHIMRLNETEEEFDARIEEYVDTDDHEDGLINAIEEERNEENL

Atome Classification :

(38 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_J_5(3C41)
?
[Raw transfer]




ATP_J_5(4YMU)
?
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




AGS_B_6(3C4J)
?
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ADP_B_6(2Q0H)
?
[Raw transfer]




AGS_A_4(3C4J)
?
[Raw transfer]




ADP_A_5(2Q0H)
?
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




ADP_B_6(2OLJ)
?
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




AT4_C_7(2OLK)
?
[Raw transfer]




AT4_A_5(2OLK)
?
[Raw transfer]




EDO_A_13(2PCL)
LOLD_AQUAE
[Raw transfer]




20 PsiBlast_PDB 88.7337%-113 - C2 -3RLF - MALK_ECOLI -
104 HHSearch 88.7037%-101 - C2 -3RLF - MALK_ECOLI -
18 PsiBlast_PDB 88.6837%-113 - C2 -3PUW - MALK_ECOLI -
17 PsiBlast_PDB 88.3037%-112 - C2 -3PUV - MALK_ECOLI -
19 PsiBlast_PDB 88.0137%-109 - C2 -3PUX - MALK_ECOLI -
24 PsiBlast_CBE 87.9337%-109 - C2 -4KI0 - ? -
36 PsiBlast_CBE 87.7937%-108 - C2 -2R6G - MALK_ECOLI (first) -
26 PsiBlast_CBE 87.7937%-112 - C2 -3PUZ - MALK_ECOLI -
14 PsiBlast_PDB 87.6337%-111 - C2 -3PUY - MALK_ECOLI -
31 PsiBlast_CBE 87.5437%-112 - C2 -2AWN - MALK_ECOLI -
122 Fugue 87.5238%-108 - C2 -1Z47 - ? -
25 PsiBlast_CBE 87.5237%-111 - C2 -3RLF - MALK_ECOLI -
107 HHSearch 87.3639%-107 - C2 -1Z47 - ? -
15 PsiBlast_PDB 87.2637%-109 - C2 -3PUZ - MALK_ECOLI -
23 PsiBlast_CBE 87.2337%-110 - C2 -4KI0 - ? -
29 PsiBlast_CBE 86.7437%-106 - C2 -2AWO - MALK_ECOLI -
2 PsiBlast_PDB 86.2940%-102 - C2 -2D62 - ? -
10 PsiBlast_PDB 86.0737%-107 - C2 -1Q1E - MALK_ECOLI -
16 PsiBlast_PDB 85.9137%-107 - C2 -3PV0 - MALK_ECOLI -
12 PsiBlast_PDB 85.7537%-108 - C2 -2AWO - MALK_ECOLI -
53 PsiBlast_CBE 63.0137%-106 - C2 -4U00 5.8 ?
89 PsiBlast_CBE 59.8337%-105 - C2 -2OLJ 4.5 ?
86 PsiBlast_CBE 59.2937% -99 - C2 -2OLK 4.3 ?
85 PsiBlast_CBE 59.0237%-100 - C2 -2OLK 4.7 ?
87 PsiBlast_CBE 58.9337%-100 - C2 -2OLK 4.1 ?
76 PsiBlast_CBE 58.6437%-101 - C2 -3C4J 3.8 ?
84 PsiBlast_CBE 58.4937% -98 - C2 -2OLK 4.4 ?
74 PsiBlast_CBE 58.4937%-101 - C2 -3C41 4.0 ?
79 PsiBlast_CBE 57.9437%-100 - C2 -2Q0H 3.5 ?
77 PsiBlast_CBE 57.9337% -99 - C2 -3C4J 5.1 ?
75 PsiBlast_CBE 57.4537% -98 - C2 -3C41 5.0 ?
78 PsiBlast_CBE 56.7637% -97 - C2 -2Q0H 4.5 ?
56 PsiBlast_CBE 56.6239%-101 - C2 -4YMU 4.9 ?
54 PsiBlast_CBE 56.5139% -99 - C2 -4YMV 4.8 ?
57 PsiBlast_CBE 56.4339%-100 - C2 -4YMU 4.5 ?
55 PsiBlast_CBE 56.0139% -98 - C2 -4YMV 4.0 ?
88 PsiBlast_CBE 55.9937% -96 - C2 -2OLJ 3.7 ?
99 PsiBlast_CBE 48.7135% -91 - C2 -2PCL 2.1 LOLD_AQUAE