@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1179: (2015-12-06 )
MIKTIQKELEGLDIRFDEPLKKYTYTKVGGPADYLAFPRNRLELSRIVKFANSQNIPWMVLGNASNIIVRDGGIRGFVIMFDKLSTVTVNGYVIEAEAGANLIETTRIARYHSLTGFEFACGIPGSVGGAVFMNAGAYGGEIAHILLSAQVLTPQGELKTIEARNMQFGYRHSVIQESGDIVISAKFALKPGDHLMITQEMDRLTYLRELKQPLEYPSCGSVFKRPPGHFAGQLISEAHLKGQRIGGVEVSQKHAGFMVNIAEGSAQDYENLIEHVINTVESTSGVHLEPEVRIIGESLL

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_B_2(1HSK)
MURB_STAAU
[Raw transfer]




FAD_A_2(3TX1)
MURB_LISMO
[Raw transfer]




FAD_A_2(3TX1)
MURB_LISMO
[Raw transfer]




FAD_B_2(1HSK)
MURB_STAAU
[Raw transfer]




FAD_B_2(1HSK)
MURB_STAAU
[Raw transfer]




FAD_A_2(4PYT)
MURB_BACLD
[Raw transfer]




FAD_A_3(2GQT)
MURB_THET8
[Raw transfer]




FAD_B_2(1HSK)
MURB_STAAU
[Raw transfer]




41 Fugue 99.2452%-110 - C3 -1HSK 14.4 MURB_STAAU
23 HHSearch 99.0952%-110 - C3 -1HSK 14.4 MURB_STAAU
1 PsiBlast_PDB 98.0652%-110 - C3 -1HSK 14.4 MURB_STAAU
25 HHSearch 96.3451%-106 - C3 -3TX1 13.6 MURB_LISMO
2 PsiBlast_PDB 96.3451%-106 - C3 -3TX1 13.6 MURB_LISMO
3 PsiBlast_PDB 86.5835%-100 - C3 -4PYT 14.2 MURB_BACLD
21 HHSearch 78.5627% -98 - C3 -3I99 - MURB_VIBCH -
22 HHSearch 78.2126% -99 - C3 -1UXY - MURB_ECOLI -
12 PsiBlast_PDB 77.6324%-100 - C3 -4JAY - MURB_PSEAE -
10 PsiBlast_PDB 77.2524% -91 - C3 -1UXY - MURB_ECOLI -
9 PsiBlast_PDB 77.2524% -91 - C3 -2MBR - MURB_ECOLI -
6 PsiBlast_PDB 76.0824% -90 - C3 -2Q85 - MURB_ECOLI -
8 PsiBlast_PDB 75.5224% -88 - C3 -1MBT - MURB_ECOLI -
7 PsiBlast_PDB 75.2624% -90 - C3 -1MBB - MURB_ECOLI -
13 PsiBlast_PDB 74.8724% -97 - C3 -4JB1 - MURB_PSEAE -
4 PsiBlast_PDB 71.2436% -90 - C3 -2GQT - MURB_THET8 -
24 HHSearch 69.4436% -78 - C3 -2GQT 14.1 MURB_THET8
5 PsiBlast_PDB 68.6336% -90 - C3 -2GQU - MURB_THET8 -
11 PsiBlast_PDB 57.9830% -78 - C3 -3I99 - MURB_VIBCH -
42 Fugue 55.1420%-106 - C3 -1UXY - ? -
44 Fugue 52.8663% -75 - C3 -1HSK 3.3 MURB_STAAU