@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1192: (2015-12-06 )
MAYKTIYPYTNEVLHEFDNISDSDLEQSLDIAHALYKTWRKEDNVEERQNQLHKVADLLRKDRDKYAEVMTKDMGKLFTEAQGEVDLCADIADYYADNGQKFLKPVPLESPNGEAYYLKQAVGVLLAVEPWNFPFYQIMRVFAPNFIVGNTMLLKHASICPASAQAFEDLVREAGAPEGAFKNIFASYDQVSNLISDPRVAGVCLTGSERGGASIAAEAGKNLKKSSMELGGNDAFLILDDADFDLLSKTIFFARLYNAGQVCTSSKRFIVMADKYDEFVNMVVETFKSAKWGDPMDSETTLAPLSSAGAKDDVLKQIKLAVDHGAEVVFGNDTIDHPGNFVMPTVLTNITKANPIYNQEIFGPVASIYKVDTEEEAIALANDSSYGLGSTVFSSDPEHAKKVAAQIETGMTFINSGWTSLPELPFGGIKNSGYGRELSQLGFDAFVNEHLVFTPNSD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_B_4(4OHT)
?
[Raw transfer]



NDP_B_18(4ITB)
?
[Raw transfer]



NDP_A_3(4ITB)
?
[Raw transfer]



NDP_B_20(4ITA)
?
[Raw transfer]



NAP_A_3(4OHT)
?
[Raw transfer]



NAP_A_4(3VZ3)
?
[Raw transfer]



NAP_B_6(3VZ3)
?
[Raw transfer]



SSN_B_6(4YWU)
?
[Raw transfer]



SSN_B_7(4YWV)
?
[Raw transfer]



EDO_A_15(4ITA)
?
[Raw transfer]



SSN_B_8(4YWV)
?
[Raw transfer]



EDO_B_24(4IT9)
?
[Raw transfer]



EDO_A_9(4ITA)
?
[Raw transfer]



EDO_A_11(4IT9)
?
[Raw transfer]



EDO_A_9(4IT9)
?
[Raw transfer]



SSN_A_4(4YWV)
?
[Raw transfer]
1 PsiBlast_PDB 99.7573% -89 - C3 -4OGD - ? -
2 PsiBlast_PDB 99.7073% -89 - C3 -4OHT 6.8 ?
23 PsiBlast_CBE 99.1573% -89 - C3 -4OHT 7.1 ?
21 PsiBlast_CBE 99.1373% -88 - C3 -4YWV 3.1 ?
22 PsiBlast_CBE 98.9273% -89 - C3 -4YWU 1.9 ?
4 PsiBlast_PDB 98.9073% -88 - C3 -4YWV 2.7 ?
3 PsiBlast_PDB 98.8373% -88 - C3 -4YWU - ? -
120 HHSearch 90.6454% -80 - C3 -3ROS - ? -
5 PsiBlast_PDB 89.8053% -78 - C3 -3ROS - ? -
133 HHSearch 88.4547% -79 - C3 -3VZ0 - ? -
6 PsiBlast_PDB 87.4746% -78 - C3 -3VZ0 - ? -
10 PsiBlast_PDB 86.4839% -80 - C3 -4ITB 4.2 ?
25 PsiBlast_CBE 86.2339% -80 - C3 -4ITA 3.1 ?
27 PsiBlast_CBE 86.1539% -80 - C3 -3VZ3 2.1 ?
9 PsiBlast_PDB 86.0939% -80 - C3 -4ITA 3.4 ?
26 PsiBlast_CBE 86.0839% -79 - C3 -4IT9 3.3 ?
24 PsiBlast_CBE 86.0239% -79 - C3 -4ITB 4.0 ?
12 PsiBlast_PDB 85.9139% -82 - C3 -3VZ3 2.5 ?
8 PsiBlast_PDB 85.8939% -80 - C3 -4IT9 3.1 ?
13 PsiBlast_PDB 85.4337% -76 - C3 -3EFV - ? -