@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1209: (2015-12-06 )
MNPLIIGMNDKQAEAVQTTDGPLLIMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAIALNPATQDTLIATFHSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQLNLDTKKWNERSILGTISNAKNDLLDEIAYEKQAGDMYTQVIAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDQNKDVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDFEKDYPQAKVVLLEENYRSTKKILQAANNVINHNKNRRPKKLWTQNDEGEQIVYHRANNEQEEAVFVASTIDNIVREQGKNFKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVIAYLNILANTSDNISFERIVNEPKRGVGPGTLEKIRSFAYEQNMSLLDASSNVMMSPLKGKAAQAVWDLANLILTLRSKLDSLTVTEITENLLDKTGYLEALQVQNTLESQARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAEVTLMTLHAAKGLEFPVVFLIGMEEGVFPLSRAIEDADELEEERRLAYVGITRAEQILFLTNANTRTLFGKTSYNRPTRFIREIDDELIQHQGLARPVNSSFGVKYSKEQPTQFGQGMSLQQALQARKSNSQPQVTAQLQALNANNSHETSWEIGDVATHKKWGDGTVLEVSGSGKTQELKINFPGIGLKKLLASVAPISKKEN

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_K_5(4C30)
?
[Raw transfer]
-
NACID_C_1(1UAA)
REP_ECOLI
[Raw transfer]
-
NACID_C_1(2PJR)
?
[Raw transfer]
-
NACID_D_2(2PJR)
?
[Raw transfer]
-
NACID_E_3(2IS1)
UVRD_ECOLI
[Raw transfer]
-
NACID_C_1(2PJR)
?
[Raw transfer]
-
NACID_D_2(2PJR)
?
[Raw transfer]
-
NACID_C_1(1UAA)
REP_ECOLI
[Raw transfer]
-
NACID_C_1(1UAA)
REP_ECOLI
[Raw transfer]
-
NACID_D_2(2IS6)
UVRD_ECOLI
[Raw transfer]
-
NACID_C_1(2IS1)
UVRD_ECOLI
[Raw transfer]
-
CHAIN_X_7(4C30)
?
[Raw transfer]
-
CHAIN_L_6(4C30)
?
[Raw transfer]
-
CHAIN_M_5(4C2T)
?
[Raw transfer]
-
CHAIN_Y_8(4C30)
?
[Raw transfer]
-
NACID_Y_1(3PJR)
?
[Raw transfer]
-
32 HHSearch 96.5957% -85 - C7 -1PJR - PCRA_GEOSE -
1 PsiBlast_PDB 95.5854% -83 - C7 -3PJR 6.4 ?
2 PsiBlast_PDB 95.0254% -85 - C7 -1PJR - PCRA_GEOSE -
25 PsiBlast_CBE 90.9942% -83 - C7 -4C30 5.8 ?
23 PsiBlast_CBE 90.2442% -85 - C7 -4C30 5.0 ?
22 PsiBlast_CBE 90.1839% -78 - C7 -4C2T - ? -
26 PsiBlast_CBE 89.6742% -78 - C7 -4C2U - ? -
6 PsiBlast_PDB 89.5841% -77 - C7 -2IS6 4.0 UVRD_ECOLI
4 PsiBlast_PDB 89.4641% -84 - C7 -2IS1 3.0 UVRD_ECOLI
8 PsiBlast_PDB 89.1842% -78 - C7 -4C2U - ? -
7 PsiBlast_PDB 89.0839% -75 - C7 -4C2T 7.4 ?
9 PsiBlast_PDB 88.7742% -81 - C7 -4C30 6.5 ?
5 PsiBlast_PDB 88.6841% -85 - C7 -2IS2 - UVRD_ECOLI -
21 PsiBlast_CBE 88.4741% -83 - C7 -2IS1 6.3 UVRD_ECOLI
24 PsiBlast_CBE 88.1142% -76 - C7 -4C30 4.4 ?
20 PsiBlast_CBE 86.7757% -79 - C7 -2PJR 10.8 ?
3 PsiBlast_PDB 86.5557% -82 - C7 -2PJR 12.2 ?
34 HHSearch 85.4338% -79 - C7 -1UAA 8.5 REP_ECOLI
10 PsiBlast_PDB 84.8538% -78 - C7 -1UAA 8.0 REP_ECOLI
27 PsiBlast_CBE 83.7038% -75 - C7 -1UAA 9.6 REP_ECOLI
30 PsiBlast_CBE 34.8368% -25 - C7 -2PJR 4.0 ?
31 PsiBlast_CBE 33.9068% -11 - C7 -2PJR 4.7 ?