@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1228: (2015-12-06 )
MSNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEARLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNLAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVAVRSRTAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIELKKEADETIVLNYLFKYTDLQVNYNFNMVAIDDYTPKQVGLSRILTSYIAHRREIIIARSKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAIVTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFANTRRSELQELAETIEIDTASLIIEEDTYVSVTRGGYVKRTSPRSFNASTVDELGKREDDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIYAELVDDFTKETYFAVTSLGQIKRFERQEISPWRTYKSKTAKYAKLKNVDDYVVTVAPIQLEDVILVTYNGYALRFSINDVPVVGSKAAGVKAMNLKDSDHIVSAFIANTTSLYLLTHRGSLKRMAIDVIPTTSRANRGLQVLRELKSKPHRVFKAGPVYLEDSSFEFDLFSSVSNHEGDTFVLEIMSKTGKVYDVDLSQWSFSERTSNGSFVSDKISDEEVFSVKIK

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_E_5(3RAD)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3RAE)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3RAF)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3LTN)
PARC_STRPN
[Raw transfer]
-
CHAIN_H_8(4KOE)
PARC_STRPN
[Raw transfer]
-
CHAIN_H_8(4KPE)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3K9F)
PARC_STRPN
[Raw transfer]
-
GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]



GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]



SM8_B_8(2Y3P)
GYRA_ECOLI
[Raw transfer]



GOL_B_8(3ILW)
GYRA_MYCTU
[Raw transfer]



SM8_A_5(2Y3P)
GYRA_ECOLI
[Raw transfer]



NACID_H_8(3RAD)
PARC_STRPN
[Raw transfer]
-
CHAIN_H_8(4KPF)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3KSA)
PARC_STRPN
[Raw transfer]
-
MFX_H_10(3FOF)
PARC_STRPN
[Raw transfer]



MPD_B_5(3IFZ)
GYRA_MYCTU
[Raw transfer]



MPD_A_3(3IFZ)
GYRA_MYCTU
[Raw transfer]



NACID_F_6(3RAE)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3RAF)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3FOF)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3K9F)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3FOE)
PARC_STRPN
[Raw transfer]
-
CHAIN_F_6(4KPE)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3RAD)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3LTN)
PARC_STRPN
[Raw transfer]
-
CHAIN_F_6(4KOE)
PARC_STRPN
[Raw transfer]
-
CHAIN_F_6(4KPF)
PARC_STRPN
[Raw transfer]
-
NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(3KSA)
PARC_STRPN
[Raw transfer]
-
NACID_E_5(3KSB)
PARC_STRPN
[Raw transfer]
-
NACID_E_5(3KSB)
PARC_STRPN
[Raw transfer]
-
NACID_E_3(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]
-
10 PsiBlast_PDB 94.9685% -70 - C3 -4KOE 4.7 PARC_STRPN
8 PsiBlast_PDB 94.5985% -70 - C3 -3RAD 4.7 PARC_STRPN
24 PsiBlast_CBE 94.3485% -71 - C3 -3RAF 4.5 PARC_STRPN
23 PsiBlast_CBE 94.3185% -69 - C3 -4KOE 4.8 PARC_STRPN
29 PsiBlast_CBE 94.2685% -76 - C3 -3KSA 4.5 PARC_STRPN
11 PsiBlast_PDB 94.2685% -71 - C3 -4KPE 3.8 PARC_STRPN
25 PsiBlast_CBE 94.2385% -70 - C3 -3RAE 3.1 PARC_STRPN
22 PsiBlast_CBE 94.2185% -68 - C3 -4KPE 2.9 PARC_STRPN
9 PsiBlast_PDB 94.2085% -70 - C3 -3RAE 5.1 PARC_STRPN
4 PsiBlast_PDB 94.0985% -76 - C3 -3KSA 4.9 PARC_STRPN
7 PsiBlast_PDB 94.0785% -68 - C3 -3RAF 4.5 PARC_STRPN
26 PsiBlast_CBE 93.9985% -73 - C3 -3RAD 4.0 PARC_STRPN
12 PsiBlast_PDB 93.9085% -73 - C3 -4KPF 4.2 PARC_STRPN
21 PsiBlast_CBE 93.7585% -70 - C3 -4KPF 4.4 PARC_STRPN
27 PsiBlast_CBE 93.5585% -72 - C3 -3LTN 3.7 PARC_STRPN
6 PsiBlast_PDB 93.5585% -71 - C3 -3LTN 3.9 PARC_STRPN
28 PsiBlast_CBE 93.5485% -77 - C3 -3KSB 3.1 PARC_STRPN
5 PsiBlast_PDB 93.3785% -77 - C3 -3KSB 4.3 PARC_STRPN
30 PsiBlast_CBE 93.3685% -69 - C3 -3K9F 4.3 PARC_STRPN
3 PsiBlast_PDB 93.2985% -68 - C3 -3K9F 5.1 PARC_STRPN
2 PsiBlast_PDB 88.1385% -72 - C3 -3FOF 3.9 PARC_STRPN
1 PsiBlast_PDB 87.5785% -77 - C3 -3FOE 4.1 PARC_STRPN
37 PsiBlast_CBE 81.8742% -62 * C3 *2Y3P 3.2 GYRA_ECOLI (first)
17 PsiBlast_PDB 81.7842% -64 - C3 -2Y3P 2.8 GYRA_ECOLI (first)
20 PsiBlast_PDB 79.1340% -61 - C3 -3IFZ 3.7 GYRA_MYCTU
40 PsiBlast_CBE 78.3241% -61 - C3 -3ILW 2.7 GYRA_MYCTU
39 PsiBlast_CBE 77.8841% -61 - C3 -3ILW 2.2 GYRA_MYCTU
47 HHSearch 77.8641% -61 - C3 -3ILW 2.7 GYRA_MYCTU
15 PsiBlast_PDB 77.7345% -61 - C3 -2XCR 5.8 GYRA_STAAN (first)
38 PsiBlast_CBE 77.6940% -58 - C3 -3IFZ 3.0 GYRA_MYCTU
33 PsiBlast_CBE 77.6945% -62 - C3 -2XCR 3.9 GYRA_STAAN (first)
35 PsiBlast_CBE 77.6745% -58 - C3 -2XCR 5.0 GYRA_STAAN (first)
34 PsiBlast_CBE 77.6345% -57 - C3 -2XCR 2.5 GYRA_STAAN (first)