@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1229: (2015-12-06 )
MAKQDITVTNYGDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNRIDVIINKDGSITVTDHGRGMPTGMHAMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSVVNALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTIDFKFNTIAERLKESAFLLKNVTLTLTDNRSEEAEHLEFHYENGVQDFVEYLNEDKETLTPIMFFEGEEQEFHIEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKSMNDYARKTGLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIVDGIVSEKLTYFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEINTMIHTIGAGVGPDFNIDDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVYIALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSLLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDNVKFTLEENTVF

Atome Classification :

(50 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DOO_B_7(4KFG)
GYRB_ECOLI
[Raw transfer]




DOO_B_12(4KQV)
?
[Raw transfer]




DOO_A_5(4KQV)
?
[Raw transfer]




ANP_A_7(1S16)
PARE_ECOLI
[Raw transfer]




ANP_A_7(1S16)
PARE_ECOLI
[Raw transfer]




XAM_C_7(4URM)
?
[Raw transfer]




DOO_A_5(4KFG)
GYRB_ECOLI
[Raw transfer]




19X_B_4(4HY1)
?
[Raw transfer]




RLI_A_3(4DUH)
GYRB_ECOLI
[Raw transfer]




CJC_A_3(4HYM)
?
[Raw transfer]




1A1_D_11(4HYP)
GYRB_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_B_8(1S16)
PARE_ECOLI
[Raw transfer]




RLI_B_4(4DUH)
GYRB_ECOLI
[Raw transfer]




1A1_C_9(4HYP)
GYRB_ECOLI
[Raw transfer]




NOV_B_6(4URO)
GYRB_STAAU
[Raw transfer]




1EU_A_3(3FV5)
PARE_ECOLI
[Raw transfer]




1A1_A_5(4HYP)
GYRB_ECOLI
[Raw transfer]




NOV_A_3(1KIJ)
?
[Raw transfer]




XAM_D_8(4URM)
?
[Raw transfer]




NOV_D_8(4URO)
GYRB_STAAU
[Raw transfer]




NOV_C_7(4URO)
GYRB_STAAU
[Raw transfer]




1A1_B_7(4HYP)
GYRB_ECOLI
[Raw transfer]




NOV_C_6(4URN)
?
[Raw transfer]




RWX_B_8(4BAE)
GYRB_MYCSM
[Raw transfer]




XAM_B_6(4URM)
?
[Raw transfer]




NOV_A_4(4URN)
?
[Raw transfer]




XAM_A_5(4URM)
?
[Raw transfer]




NOV_A_5(4URO)
GYRB_STAAU
[Raw transfer]




NOV_B_5(4URN)
?
[Raw transfer]




NOV_B_4(1KIJ)
?
[Raw transfer]




19Y_A_3(4HXZ)
?
[Raw transfer]




NOV_B_2(1AJ6)
GYRB_ECOLI
[Raw transfer]




1 PsiBlast_PDB 90.3488% -97 - C4 -4JUO - PARE_STRPN -
34 PsiBlast_CBE 61.2545% -79 - C3 -3ZM7 - GYRB_MYCTU -
33 PsiBlast_CBE 60.9045% -80 - C3 -3ZM7 - GYRB_MYCTU -
71 PsiBlast_CBE 60.6145% -72 - C3 -1KIJ 7.5 ?
40 PsiBlast_CBE 60.5645% -70 - C3 -3ZKD - GYRB_MYCTU -
55 PsiBlast_CBE 60.5045% -72 - C3 -3ZKB - GYRB_MYCTU -
35 PsiBlast_CBE 60.3745% -65 - C3 -3ZKD - GYRB_MYCTU -
53 PsiBlast_CBE 60.3345% -71 - C3 -3ZKB - GYRB_MYCTU -
36 PsiBlast_CBE 60.1845% -75 - C3 -3ZKD - GYRB_MYCTU -
20 PsiBlast_PDB 60.1045% -70 - C3 -3ZKB - GYRB_MYCTU -
37 PsiBlast_CBE 59.9845% -71 - C3 -3ZKD - GYRB_MYCTU -
54 PsiBlast_CBE 59.9045% -70 - C3 -3ZKB - GYRB_MYCTU -
125 HHSearch 59.8646% -73 - C3 -1KIJ 6.5 ?
42 PsiBlast_CBE 59.7245% -69 - C3 -3ZKD - GYRB_MYCTU -
111 Fugue 59.6349% -66 - C3 -1EI1 8.3 GYRB_ECOLI
39 PsiBlast_CBE 59.6345% -66 - C3 -3ZKD - GYRB_MYCTU -
38 PsiBlast_CBE 59.4645% -71 - C3 -3ZKD - GYRB_MYCTU -
59 PsiBlast_CBE 59.4548% -68 - C3 -4WUB - GYRB_ECOLI -
112 Fugue 59.4049% -66 - C3 -1EI1 8.3 GYRB_ECOLI
72 PsiBlast_CBE 59.0845% -73 - C3 -1KIJ - ? -
89 PsiBlast_CBE 56.6136% -75 - C3 -4KQV 6.8 ?
126 HHSearch 56.5837% -66 - C3 -1S16 9.8 PARE_ECOLI
92 PsiBlast_CBE 56.1936% -75 - C3 -4HXZ 5.2 ?
80 PsiBlast_CBE 55.8038% -58 - C3 -1S16 10.2 PARE_ECOLI
90 PsiBlast_CBE 55.4436% -72 - C3 -4HYM 6.1 ?
81 PsiBlast_CBE 54.5538% -58 - C3 -1S16 9.8 PARE_ECOLI
134 HHSearch 51.0148% -80 * C3 *3FV5 5.5 PARE_ECOLI
75 PsiBlast_CBE 50.6567% -77 - C3 -4URN 4.8 ?
73 PsiBlast_CBE 50.2967% -78 - C3 -4URN 4.6 ?
102 PsiBlast_CBE 48.6857% -78 - C3 -4URM 9.0 ?
104 PsiBlast_CBE 48.2652% -74 - C3 -1AJ6 5.2 GYRB_ECOLI
98 PsiBlast_CBE 47.4157% -71 - C3 -4URO 5.7 GYRB_STAAU
108 PsiBlast_CBE 47.3253% -73 - C3 -4HYP 7.0 GYRB_ECOLI
103 PsiBlast_CBE 47.1357% -71 - C3 -4URM 8.3 ?
107 PsiBlast_CBE 46.6553% -74 - C3 -4HYP 7.4 GYRB_ECOLI
105 PsiBlast_CBE 46.5553% -68 - C3 -4KFG 7.5 GYRB_ECOLI
101 PsiBlast_CBE 46.5457% -78 - C3 -4URM 8.3 ?
96 PsiBlast_CBE 46.1757% -79 - C3 -4URO 5.1 GYRB_STAAU
109 PsiBlast_CBE 45.9053% -71 - C3 -4HYP 6.7 GYRB_ECOLI
94 PsiBlast_CBE 45.8952% -70 - C3 -4DUH 6.9 GYRB_ECOLI
110 PsiBlast_CBE 45.7953% -72 - C3 -4HYP 7.5 GYRB_ECOLI
87 PsiBlast_CBE 45.5654% -79 - C3 -4BAE 7.6 GYRB_MYCSM
74 PsiBlast_CBE 45.1767% -70 - C3 -4URN 4.7 ?
91 PsiBlast_CBE 45.0936% -81 - C3 -4HY1 7.2 ?
99 PsiBlast_CBE 44.9557% -75 - C3 -4URO 6.3 GYRB_STAAU
106 PsiBlast_CBE 44.9253% -66 - C3 -4KFG 7.2 GYRB_ECOLI
95 PsiBlast_CBE 44.8352% -67 - C3 -4DUH 6.2 GYRB_ECOLI
100 PsiBlast_CBE 44.6357% -73 - C3 -4URM 9.2 ?
97 PsiBlast_CBE 43.2057% -69 - C3 -4URO 5.4 GYRB_STAAU
88 PsiBlast_CBE 43.1336% -77 - C3 -4KQV 7.4 ?