@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1231: (2015-12-06 )
MKHSSWHDLIKRELPNHYYNKINTFMDAVYESGIVYPPRDKVFNAIQITPLENVKVVIIGQDPYHGPQQAQGLSFSVPDNLPAPPSLQNILKELAEDIGSRSHHDLTSWAQQGVLLLNACLTVPEHQANGHAGLIWEPFTDAVIKVVNQKETPVVFILWGGYARKKKSLIDNPIHHIIESPHPSPLSAYRGFFGSRPFSRTNHFLEEEGINEIDWLN

Atome Classification :

(54 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FCF_A_2(3FCF)
UNG_HUMAN
[Raw transfer]




302_B_2(2HXM)
UNG_HUMAN
[Raw transfer]




3FI_A_2(3FCI)
UNG_HUMAN
[Raw transfer]




5NU_A_2(4WS5)
?
[Raw transfer]




3FI_A_2(3FCI)
UNG_HUMAN
[Raw transfer]




URA_B_2(5EUG)
UNG_ECOLI
[Raw transfer]




3FL_B_8(3FCL)
UNG_HUMAN
[Raw transfer]




3FL_A_3(3FCL)
UNG_HUMAN
[Raw transfer]




5NU_A_4(4WS4)
?
[Raw transfer]




URA_B_2(2EUG)
UNG_ECOLI
[Raw transfer]




URA_A_2(4WRU)
?
[Raw transfer]




GOL_A_3(1OKB)
?
[Raw transfer]




URA_A_2(4WPL)
?
[Raw transfer]




GOL_B_5(1OKB)
?
[Raw transfer]




URF_A_2(4WS0)
?
[Raw transfer]




URF_A_2(4WS1)
?
[Raw transfer]




GOL_A_8(4WRW)
?
[Raw transfer]




6UA_A_4(4WS2)
?
[Raw transfer]




GOL_B_2(3EUG)
UNG_ECOLI
[Raw transfer]




URA_D_4(1UDH)
UNG_HHV11
[Raw transfer]




URA_A_2(4WRV)
?
[Raw transfer]




5UC_A_2(4WS7)
?
[Raw transfer]




FCK_B_2(3FCK)
UNG_HUMAN
[Raw transfer]




6UA_A_2(4WS3)
?
[Raw transfer]




URA_B_2(1FLZ)
UNG_ECOLI
[Raw transfer]




DUR_A_2(2C53)
UNG_HHV11
[Raw transfer]




GOL_A_4(3ZOQ)
UNG_BACSU
[Raw transfer]




URB_A_3(3CXM)
?
[Raw transfer]




URB_A_3(3CXM)
?
[Raw transfer]




TUL_A_2(4WS8)
?
[Raw transfer]




NACID_B_2(4UQM)
?
[Raw transfer]

-

EDO_A_5(4WS0)
?
[Raw transfer]




CIT_A_2(4WRY)
?
[Raw transfer]




CIT_A_2(4WPK)
?
[Raw transfer]




CIT_A_3(4WS4)
?
[Raw transfer]




FLC_A_2(3A7N)
UNG_MYCTU
[Raw transfer]




CIT_A_3(4WS2)
?
[Raw transfer]




NACID_C_3(4UQM)
?
[Raw transfer]

-

CIT_A_4(4WS6)
?
[Raw transfer]




NACID_D_1(1LAU)
UNG_HHV11
[Raw transfer]

-

NACID_C_2(2OXM)
UNG_HUMAN
[Raw transfer]

-

CIT_A_2(4WRZ)
?
[Raw transfer]




NACID_A_1(1SSP)
UNG_HUMAN
[Raw transfer]

-

DMS_A_5(4WPL)
?
[Raw transfer]




NACID_B_2(4SKN)
UNG_HUMAN
[Raw transfer]

-

NACID_B_2(2SSP)
UNG_HUMAN
[Raw transfer]

-

NACID_C_2(1EMH)
UNG_HUMAN
[Raw transfer]

-

NACID_C_2(1EMJ)
UNG_HUMAN
[Raw transfer]

-

NACID_B_2(1SSP)
UNG_HUMAN
[Raw transfer]

-

NACID_C_2(1Q3F)
UNG_HUMAN
[Raw transfer]

-

CHAIN_C_2(2OYT)
UNG_HUMAN
[Raw transfer]

-

CHAIN_C_3(3UF7)
UNG_ECOLI
[Raw transfer]

-

CHAIN_C_3(3UF7)
UNG_ECOLI
[Raw transfer]

-

7 PsiBlast_PDB 97.6255%-107 - C10 -3UFM - UNG_DEIRA -
4 PsiBlast_PDB 97.2355%-106 - C10 -2BOO - UNG_DEIRA -
3 PsiBlast_PDB 95.5655% -99 - C10 -4UQM 8.5 ?
2 PsiBlast_PDB 95.2152%-106 - C10 -3ZOR - UNG_BACSU -
1 PsiBlast_PDB 95.0452%-104 - C10 -3ZOQ 2.5 UNG_BACSU
6 PsiBlast_PDB 94.6550%-107 - C10 -3WDG - UNG_STAAR -
31 PsiBlast_CBE 94.0948%-102 - C10 -1OKB 3.2 ?
5 PsiBlast_PDB 93.8550%-103 - C10 -3WDF - UNG_STAAR -
14 PsiBlast_PDB 93.7651%-102 - C10 -1Q3F 2.8 UNG_HUMAN
115 HHSearch 93.6150%-101 - C10 -3WDF - UNG_STAAR -
12 PsiBlast_PDB 93.4651%-102 - C10 -1EMH 4.0 UNG_HUMAN
18 PsiBlast_PDB 93.4551%-103 - C10 -2OYT 2.1 UNG_HUMAN
11 PsiBlast_PDB 93.3151%-100 - C10 -1SSP 7.3 UNG_HUMAN
8 PsiBlast_PDB 93.2550%-102 - C10 -2JHQ - UNG_VIBCH -
20 PsiBlast_PDB 93.0751%-101 - C10 -3FCI 5.9 UNG_HUMAN
30 PsiBlast_CBE 92.8248%-102 - C10 -1OKB 3.1 ?
24 PsiBlast_CBE 92.7051% -97 - C10 -2SSP 2.0 UNG_HUMAN
21 PsiBlast_CBE 92.5851% -97 - C10 -3FCL 5.7 UNG_HUMAN
17 PsiBlast_PDB 92.5051%-101 - C10 -2OXM 3.4 UNG_HUMAN
23 PsiBlast_CBE 92.4651%-102 - C10 -3FCK 1.9 UNG_HUMAN
19 PsiBlast_PDB 92.3351% -99 - C10 -3FCF 6.9 UNG_HUMAN
15 PsiBlast_PDB 92.2751% -97 - C10 -2HXM 7.2 UNG_HUMAN
112 HHSearch 92.1051% -95 * C10 *3FCI 5.9 UNG_HUMAN
22 PsiBlast_CBE 92.0651% -96 - C10 -3FCL 5.6 UNG_HUMAN
13 PsiBlast_PDB 91.8551%-101 - C10 -1EMJ 2.3 UNG_HUMAN
25 PsiBlast_CBE 91.1650%-100 - C10 -4SKN 3.8 UNG_HUMAN
26 PsiBlast_CBE 91.1550%-102 - C10 -3EUG 2.6 UNG_ECOLI
27 PsiBlast_CBE 90.6950%-100 - C10 -2EUG 3.3 UNG_ECOLI
116 HHSearch 89.8345% -93 - C10 -3CXM 3.3 ?
44 PsiBlast_CBE 88.8247%-109 - C10 -4WS0 3.1 ?
28 PsiBlast_CBE 88.3450% -96 - C10 -1FLZ 3.6 UNG_ECOLI
43 PsiBlast_CBE 88.2547%-106 - C10 -4WS1 3.2 ?
50 PsiBlast_CBE 88.2447%-108 - C10 -4WRU 3.5 ?
38 PsiBlast_CBE 88.1047%-105 - C10 -4WS6 3.1 ?
29 PsiBlast_CBE 88.0850%-100 - C10 -3UF7 5.5 UNG_ECOLI
51 PsiBlast_CBE 87.9947%-107 - C10 -4WPL 3.5 ?
32 PsiBlast_CBE 87.9849%-103 - C10 -5EUG 3.3 UNG_ECOLI
53 PsiBlast_CBE 87.7947%-112 - C10 -3A7N 2.5 UNG_MYCTU
39 PsiBlast_CBE 87.7947%-113 - C10 -4WS5 3.9 ?
52 PsiBlast_CBE 87.6747%-104 - C10 -4WPK 3.1 ?
114 HHSearch 87.6350% -96 - C10 -3UF7 5.5 UNG_ECOLI
40 PsiBlast_CBE 87.5647%-104 - C10 -4WS4 3.9 ?
46 PsiBlast_CBE 87.4847%-106 - C10 -4WRY 2.4 ?
37 PsiBlast_CBE 87.3947%-105 - C10 -4WS7 3.3 ?
42 PsiBlast_CBE 87.3647%-104 - C10 -4WS2 3.7 ?
58 PsiBlast_CBE 87.1637%-106 - C10 -1LAU 5.8 UNG_HHV11
45 PsiBlast_CBE 86.9847%-105 - C10 -4WRZ 3.1 ?
60 PsiBlast_CBE 86.4936%-105 - C10 -2C53 4.0 UNG_HHV11
56 PsiBlast_CBE 86.2637%-103 - C10 -1UDH 3.5 UNG_HHV11
41 PsiBlast_CBE 85.7647%-104 - C10 -4WS3 3.6 ?
33 PsiBlast_CBE 85.5648%-100 - C10 -3CXM 3.3 ?
49 PsiBlast_CBE 85.2847%-104 - C10 -4WRV 3.4 ?
36 PsiBlast_CBE 85.2747%-103 - C10 -4WS8 3.1 ?
48 PsiBlast_CBE 85.0247%-100 - C10 -4WRW 2.5 ?