@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1256: (2015-12-06 )
MDELKKLAGVTAAKYVKNGMIVGLGTGSTAYFFVEEIGRRVKEEGLQVVGVTTSNRTTEQARGLGIPLKSADDIDVIDVTVDGADEVDPDFNGIKGGGGALLMEKIVATPTKEYIWVVDESKLVETLGAFKLPVEVVRYGSERLFRVFKSKGYCPSFRETEGDRFITDMGNYIIDLDLKKIEDPKQLANELDHTVGVVEHGLFNSMVNKVIVAGKNGLDILEK

Atome Classification :

(42 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

5RP_A_5(4M8L)
RPIA_FRATW
[Raw transfer]



DER_C_19(1LK7)
RPIA_PYRHO
[Raw transfer]



5RP_B_22(4M8L)
RPIA_FRATW
[Raw transfer]



DER_A_17(1LK7)
RPIA_PYRHO
[Raw transfer]



DER_B_18(1LK7)
RPIA_PYRHO
[Raw transfer]



A5P_A_4(1UJ6)
RPIA_THET2
[Raw transfer]



CIT_D_4(1M0S)
RPIA_HAEIN
[Raw transfer]



A5P_A_4(1UJ6)
RPIA_THET2
[Raw transfer]



DER_D_20(1LK7)
RPIA_PYRHO
[Raw transfer]



5RP_B_4(3ENW)
RPIA_VIBVY
[Raw transfer]



CIT_C_3(1M0S)
RPIA_HAEIN
[Raw transfer]



CIT_C_3(1M0S)
RPIA_HAEIN
[Raw transfer]



5RP_A_2(1UJ5)
RPIA_THET2
[Raw transfer]



FLC_A_5(4X84)
RPIA_PSEAE
[Raw transfer]



FLC_B_6(4X84)
RPIA_PSEAE
[Raw transfer]



5RP_A_3(3HHE)
RPIA_BARHE
[Raw transfer]



5RP_A_3(3ENW)
RPIA_VIBVY
[Raw transfer]



5RP_A_3(3HHE)
RPIA_BARHE
[Raw transfer]



FLC_C_7(4X84)
RPIA_PSEAE
[Raw transfer]



FLC_D_8(4X84)
RPIA_PSEAE
[Raw transfer]



5RP_B_6(3HHE)
RPIA_BARHE
[Raw transfer]



ABF_A_3(1O8B)
RPIA_ECOLI
[Raw transfer]



ABF_A_3(1O8B)
RPIA_ECOLI
[Raw transfer]



MLT_A_4(4NML)
?
[Raw transfer]



EDO_A_3(3U7J)
?
[Raw transfer]



ABF_A_3(3ENV)
RPIA_VIBVY
[Raw transfer]



PGO_D_19(3IXQ)
RPIA_METJA
[Raw transfer]



PGO_C_15(3IXQ)
RPIA_METJA
[Raw transfer]



PGO_A_8(3IXQ)
RPIA_METJA
[Raw transfer]



PGO_A_8(3IXQ)
RPIA_METJA
[Raw transfer]



PGO_D_18(3IXQ)
RPIA_METJA
[Raw transfer]



PGO_B_12(3IXQ)
RPIA_METJA
[Raw transfer]



ABF_B_4(3ENV)
RPIA_VIBVY
[Raw transfer]
59 HHSearch 95.0677% -96 - C10 -3L7O - RPIA_STRMU -
1 PsiBlast_PDB 94.7976% -96 - C10 -3L7O - RPIA_STRMU -
21 PsiBlast_CBE 92.4658% -95 - C10 -4GMK - ? -
2 PsiBlast_PDB 91.1458% -94 - C10 -4GMK - ? -
5 PsiBlast_PDB 81.4543% -92 - C10 -1UJ5 3.9 RPIA_THET2
68 HHSearch 80.4742% -85 - C10 -3IXQ 2.0 RPIA_METJA
32 PsiBlast_CBE 80.3542% -90 - C10 -3IXQ 3.4 RPIA_METJA
13 PsiBlast_PDB 79.6942% -87 - C10 -3IXQ 2.0 RPIA_METJA
33 PsiBlast_CBE 79.5742% -89 - C10 -3IXQ 2.6 RPIA_METJA
12 PsiBlast_PDB 79.5741% -88 - C10 -1UJ6 4.0 RPIA_THET2
11 PsiBlast_PDB 79.5541% -86 - C10 -1UJ4 - RPIA_THET2 -
34 PsiBlast_CBE 79.2142% -89 - C10 -3IXQ 3.5 RPIA_METJA
63 HHSearch 79.0142% -86 - C10 -1UJ6 4.0 RPIA_THET2
25 PsiBlast_CBE 79.0139% -80 - C10 -1LK5 - RPIA_PYRHO -
27 PsiBlast_CBE 78.2539% -79 - C10 -1LK5 - RPIA_PYRHO -
18 PsiBlast_PDB 78.2139% -82 - C10 -4NML 3.2 ?
24 PsiBlast_CBE 78.0639% -79 - C10 -1LK7 4.2 RPIA_PYRHO
26 PsiBlast_CBE 77.9039% -77 - C10 -1LK5 - RPIA_PYRHO -
60 HHSearch 77.7439% -82 * C10 *1LK5 - RPIA_PYRHO -
3 PsiBlast_PDB 76.8239% -78 - C10 -1LK5 - RPIA_PYRHO -
4 PsiBlast_PDB 76.8139% -77 - C10 -1LK7 4.1 RPIA_PYRHO
22 PsiBlast_CBE 76.7039% -77 - C10 -1LK7 4.1 RPIA_PYRHO
23 PsiBlast_CBE 76.2939% -77 - C10 -1LK7 4.0 RPIA_PYRHO
65 HHSearch 74.7638% -78 - C10 -3HHE 4.4 RPIA_BARHE
7 PsiBlast_PDB 73.0439% -76 - C10 -3HHE 4.4 RPIA_BARHE
19 PsiBlast_PDB 72.3640% -72 - C10 -3U7J 2.7 ?
29 PsiBlast_CBE 71.3139% -80 - C10 -3HHE 3.7 RPIA_BARHE
67 HHSearch 71.2440% -77 - C10 -1M0S 3.2 RPIA_HAEIN
10 PsiBlast_PDB 70.0841% -67 - C10 -3ENW 3.4 RPIA_VIBVY
9 PsiBlast_PDB 70.0741% -62 - C10 -3ENV 3.0 RPIA_VIBVY
30 PsiBlast_CBE 69.9441% -65 - C10 -3ENW 2.9 RPIA_VIBVY
31 PsiBlast_CBE 69.4041% -69 - C10 -3ENV 2.8 RPIA_VIBVY
46 PsiBlast_CBE 69.3036% -67 - C10 -4X84 3.5 RPIA_PSEAE
39 PsiBlast_CBE 68.3639% -74 - C10 -4M8L 3.6 RPIA_FRATW
47 PsiBlast_CBE 68.3136% -65 - C10 -4X84 3.5 RPIA_PSEAE
38 PsiBlast_CBE 67.9639% -74 - C10 -4M8L 4.0 RPIA_FRATW
35 PsiBlast_CBE 67.8241% -60 - C10 -1M0S 3.1 RPIA_HAEIN
48 PsiBlast_CBE 66.8736% -68 - C10 -4X84 3.5 RPIA_PSEAE
45 PsiBlast_CBE 66.2336% -64 - C10 -4X84 3.5 RPIA_PSEAE
14 PsiBlast_PDB 64.8341% -58 - C10 -1M0S 3.2 RPIA_HAEIN
64 HHSearch 60.5538% -65 - C10 -1O8B 4.4 RPIA_ECOLI
16 PsiBlast_PDB 55.9439% -56 - C10 -1O8B 4.4 RPIA_ECOLI