@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1270: (2015-12-06 )
MKQVVDNQTQNKELVKNGDFNQTNPVSGSWSHTSAREWSAWIDKENTADKSPIIQRTEQGQVSLSSDKGFRGAVTQKVNIDPTKKYEVKFDIETSNKAGQAFLRIMEKKDNNTRLWLSEMTSGTTNKHTLTKIYNPKLNVSEVTLELYYEKGTGSATFDNISMKAKGPKDSEHPQPVTTQIEESVNTALNKNYVFNKADYQYTLTNPSLGKIVGGILYPNATGSTTVKISDKSGKIIKEVPLSVTASTEDKFTKLLDKWNDVTIGNHVYDTNDSNMQKINQKLDETNAKNIKTIKLDSNHTFLWKDLDNLNNSAQLTATYRRLEDLAKQITNPHSTIYKNEKAIRTVKESLAWLHQNFYNVNKDIEGSANWWDFEIGVPRSITATLALMNNYFTDAEIKTYTDPIEHFVPDAGYFRKTLDNPFKALGGNLVDMGRVKIIEGLLRKDNTIIEKTSHSLKNLFTTATKAEGFYADGSYIDHTNVAYTGAYGNVLIDGLTQLLPIIQETDYKISNQELDMVYKWINQSFLPLIVKGELMDMSRGRSISREAASSHAAAVEVLRGFLRLANMSNEERNLDLKSTIKTIITSNKFYNVFNNLKSYSDIANMNKMLNDSTVATKPLKSNLSTFNSMDRLAYYNAEKDFGFALSLHSKRTLNYEGMNDENTRDWYTGDGMFYLYNSDQSHYSNHFWPTVNPYKMAGTTEKDAKREDTTKEFMSKHSKDAKEKTGQVTGTSDFVGSVKLNDHFALAAMDFTNWDRTLTAQKGWVILNDKIVFLGSNIKNTNGIGNVSTTIDQRKDDSKTPYTTYVNGKTIDLKQASSQQFTDTKSVFLESKEPGRNIGYIFFKNSTIDIERKEQTGTWNSINRTSKNTSIVSNPFITISQKHDNKGDSYGYMMVPNIDRTSFDKLANSKEVELLENSSKQQVIYDKNSQTWAVIKHDNQESLINNQFKMNKAGLYLVQKVGNDYQNVYYQPQTMTKTDQLAI

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PVC_A_2(1W3Y)
HYSA_STRPN
[Raw transfer]



SUGAR_B_2(1LXK)
HYSA_STRPN
[Raw transfer]
-
GOL_A_2(2WCO)
?
[Raw transfer]



GOL_A_4(1CB8)
CSLA_PEDHD
[Raw transfer]



FMT_A_3(2WCO)
?
[Raw transfer]



SUGAR_B_2(1N7Q)
HYSA_STRPN
[Raw transfer]
-
SUGAR_B_2(1LOH)
HYSA_STRPN
[Raw transfer]
-
ASC_B_2(1F9G)
HYSA_STRPN
[Raw transfer]



SUGAR_A_2(1OJO)
HYSA_STRPN
[Raw transfer]
-
SIE_A_2(2BRP)
HYSA_STRPN
[Raw transfer]



FMT_A_4(2WCO)
?
[Raw transfer]



SUGAR_B_2(1N7R)
HYSA_STRPN
[Raw transfer]
-
SUGAR_A_3(1C82)
HYSA_STRPN
[Raw transfer]
-
MLA_X_2(2BRV)
HYSA_STRPN
[Raw transfer]



SUGAR_A_2(1OJM)
HYSA_STRPN
[Raw transfer]
-
SUGAR_A_2(1OJP)
HYSA_STRPN
[Raw transfer]
-
SUGAR_A_2(1OJN)
HYSA_STRPN
[Raw transfer]
-
SUGAR_C_3(1I8Q)
HYSA_STRA3
[Raw transfer]
-
50 Fugue 99.7398% -63 - C1 -1F1S - HYSA_STRA3 -
1 PsiBlast_PDB 99.6698% -63 - C1 -1F1S - HYSA_STRA3 -
28 HHSearch 99.1698% -62 - C1 -1F1S - HYSA_STRA3 -
2 PsiBlast_PDB 98.3498% -60 - C1 -1I8Q 2.8 HYSA_STRA3
49 Fugue 80.4853% -54 - C1 -1EGU - HYSA_STRPN -
13 PsiBlast_PDB 80.3353% -55 - C1 -1LOH 6.2 HYSA_STRPN
21 PsiBlast_CBE 80.2853% -57 - C1 -2BRW - HYSA_STRPN -
19 PsiBlast_PDB 80.2252% -55 - C1 -1N7Q 4.4 HYSA_STRPN
10 PsiBlast_PDB 80.1953% -57 - C1 -2BRW - HYSA_STRPN -
29 HHSearch 80.0953% -56 - C1 -1N7O - HYSA_STRPN -
51 Fugue 80.0653% -53 - C1 -1EGU - HYSA_STRPN -
8 PsiBlast_PDB 80.0253% -55 - C1 -2BRP 3.8 HYSA_STRPN
15 PsiBlast_PDB 80.0053% -56 - C1 -1OJO 4.6 HYSA_STRPN
12 PsiBlast_PDB 80.0053% -55 - C1 -1OJM 5.1 HYSA_STRPN
5 PsiBlast_PDB 79.9953% -56 - C1 -1C82 2.6 HYSA_STRPN
4 PsiBlast_PDB 79.9753% -56 - C1 -1F9G 2.0 HYSA_STRPN
6 PsiBlast_PDB 79.9353% -55 - C1 -1OJP 4.8 HYSA_STRPN
20 PsiBlast_PDB 79.8652% -54 - C1 -1N7R 2.8 HYSA_STRPN
14 PsiBlast_PDB 79.8053% -54 - C1 -1LXK 9.5 HYSA_STRPN
3 PsiBlast_PDB 79.7353% -54 - C1 -1EGU - HYSA_STRPN -
11 PsiBlast_PDB 79.6653% -57 - C1 -1OJN 5.3 HYSA_STRPN
7 PsiBlast_PDB 79.6553% -55 - C1 -1W3Y 4.3 HYSA_STRPN
9 PsiBlast_PDB 79.4553% -56 - C1 -2BRV 3.3 HYSA_STRPN