@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1387: (2015-12-07 )
MTKISWTGFSKKSPEERIHYLEEQDFLADSSLEIVTNQDLLSLSLANQMAENVIGRIALPFSLVPDVLVNGKVYQVPYVTEEPSVVAAASFAAKIIKRSGGFLTTVHNRKMIGQVALYDVQDSQHAKESILNQKQQLLEIANAAHPSIVKRGGGACDLTIEIKEGFLIVYLMVDTKEAMGANMVNTMMEALSSPLEDISKGKSLMSILSNYATESLVTATCRVDLRFLSRQKEEAIKLAQKMTMASQLAQVDPYRASTHNKGIFNGIDAIVLATGNDWRAIEAGAHTYAVKDGQYRGLSKWSYKVDDNFLEGTLTLPMPVATKGGSIGINPSVQLAHDLLGRPNAKELASIVLSIGLAQNFAALKALVSTGIQAGHMKLQAKSLALLAGAKEEQISEVVKQLLDSKHMNLETAQKIVNKLTKSKKRI

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

COA_E_5(1R31)
MVAA_PSEMV
[Raw transfer]



NAD_C_3(1QAY)
MVAA_PSEMV
[Raw transfer]



GOL_A_3(3QAE)
?
[Raw transfer]



GOL_A_3(3QAU)
?
[Raw transfer]



1CZ_A_3(4I56)
MVAA_PSEMV
[Raw transfer]



HMG_C_3(1QAX)
MVAA_PSEMV
[Raw transfer]



1CV_A_3(4I4B)
MVAA_PSEMV
[Raw transfer]



LVA_D_4(1T02)
MVAA_PSEMV
[Raw transfer]



MEV_B_9(4I6Y)
MVAA_PSEMV
[Raw transfer]



1CO_B_7(4I6W)
MVAA_PSEMV
[Raw transfer]



MEV_A_3(4I6Y)
MVAA_PSEMV
[Raw transfer]



GOL_B_8(4I56)
MVAA_PSEMV
[Raw transfer]



GOL_F_6(1R7I)
MVAA_PSEMV
[Raw transfer]



HMG_A_3(4I6A)
MVAA_PSEMV
[Raw transfer]



1CO_A_3(4I6W)
MVAA_PSEMV
[Raw transfer]
2 PsiBlast_PDB 99.8563%-108 - C3 -3QAU 2.9 ?
32 HHSearch 93.5763%-102 - C3 -3QAE 2.2 ?
1 PsiBlast_PDB 93.4763%-103 - C3 -3QAE - ? -
3 PsiBlast_PDB 83.8039% -93 - C3 -1QAX - MVAA_PSEMV -
11 PsiBlast_PDB 83.7439% -97 - C3 -4I6W 2.8 MVAA_PSEMV
9 PsiBlast_PDB 83.7239% -97 - C3 -4I64 - MVAA_PSEMV -
8 PsiBlast_PDB 83.6639% -97 - C3 -4I56 2.8 MVAA_PSEMV
22 PsiBlast_CBE 83.5139% -97 - C3 -4I6W 2.8 MVAA_PSEMV
10 PsiBlast_PDB 83.5139% -99 - C3 -4I6A - MVAA_PSEMV -
12 PsiBlast_PDB 83.3839% -95 - C3 -4I6Y 2.8 MVAA_PSEMV
5 PsiBlast_PDB 83.1939% -97 - C3 -1R31 - MVAA_PSEMV -
6 PsiBlast_PDB 83.1239% -94 - C3 -1R7I - MVAA_PSEMV -
26 PsiBlast_CBE 83.0939% -95 - C3 -4I4B 2.2 MVAA_PSEMV
21 PsiBlast_CBE 83.0439% -93 - C3 -4I6Y 2.8 MVAA_PSEMV
23 PsiBlast_CBE 82.8939% -97 - C3 -4I6A 2.2 MVAA_PSEMV
31 PsiBlast_CBE 82.8039% -95 - C3 -1QAX 2.4 MVAA_PSEMV
24 PsiBlast_CBE 82.6839% -97 - C3 -4I64 - MVAA_PSEMV -
43 Fugue 82.6740% -94 * C3 *1QAY - MVAA_PSEMV -
28 PsiBlast_CBE 82.3639% -95 - C3 -1R7I 2.7 MVAA_PSEMV
30 PsiBlast_CBE 82.3439% -96 - C3 -1QAY 6.5 MVAA_PSEMV
29 PsiBlast_CBE 82.2839% -94 - C3 -1R31 Error MVAA_PSEMV
27 PsiBlast_CBE 82.0339% -97 - C3 -1T02 2.9 MVAA_PSEMV
25 PsiBlast_CBE 81.9039% -97 - C3 -4I56 2.2 MVAA_PSEMV