@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1407: (2015-12-07 )
MRKKSVFLRLWSYLTRYKATLFLAIFLKVLSSFMSVLEPFILGLAITELTANLVDMAKGVSGAELNVPYIAGILIIYFFRGVFYELGSYGSNYFMTTVVQKSIRDIRHDLNHKINKVPVSYFDKHQFGDMLGRFTSDVETVSNALQQSFLQIINAFLSIILVVVMVLYLNVPLAMIIIACIPVTYFSAQAILKRSQPYFKEQAKILGELNGFVQEKLTGFNIIKLYGREEASSQEFRDITDNLRHVGFKASFISGIMMPVLNGISDFIYLIIAFVGGLQVIAGTLTIGNMQAFVQYVWQISQPVQTITQLAGVLQSAKSSLERIFEVLDEEEEANQVTEKLSHDLTGQVSFHGVDFHYSPDKPLIRDFNLDVEPGQMIAIVGPTGAGKTTLINLLMRFYDVSEGAITVDGHDIRHLSRQDFRQQFGMVLQDAWLYEGTIKENLRFGNLEASDEDIVAAAKAANVDHFIRTLPGGYNMVMNQESSNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKKLMEGRTSFVIAHRLSTIQEADNILVLKDGQIIEQGNHQHLLADKGFYYELYNSQFSNSK

Atome Classification :

(42 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_H_8(2FGK)

[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ACP_A_4(4AYT)
ABCBA_HUMAN
[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




ADP_A_3(3NHA)

[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ADP_A_2(3NHB)

[Raw transfer]




ADP_A_2(5DGX)
?
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]




AGS_A_3(4S0F)
?
[Raw transfer]




ADP_A_3(1JJ7)

[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ANP_A_2(4AYW)
ABCBA_HUMAN
[Raw transfer]




AGS_B_4(4S0F)
?
[Raw transfer]




3 PsiBlast_PDB 92.7939%-125 - C1 -4Q4H - Y288_THEMA -
2 PsiBlast_PDB 91.6339%-125 - C1 -4Q4A - Y288_THEMA -
1 PsiBlast_PDB 91.3939%-125 - C1 -3QF4 - Y288_THEMA -
4 PsiBlast_PDB 91.3339%-125 - C1 -4Q4J - Y288_THEMA -
21 PsiBlast_CBE 83.1632%-115 - C1 -4Q4A - ? -
22 PsiBlast_CBE 83.0532%-115 - C1 -3QF4 - ? -
19 PsiBlast_PDB 81.2529%-125 - C1 -3ZDQ - ABCBA_HUMAN -
18 PsiBlast_PDB 80.8929%-126 - C1 -4AYX 5.4 ABCBA_HUMAN
17 PsiBlast_PDB 80.0229%-124 - C1 -4AYT 6.5 ABCBA_HUMAN
5 PsiBlast_PDB 79.8230%-109 - C1 -2HYD - Y1866_STAAM -
93 HHSearch 79.0828%-115 - C1 -3ZDQ - ABCBA_HUMAN -
6 PsiBlast_PDB 78.4030%-108 - C1 -2ONJ - Y1866_STAAM -
20 PsiBlast_PDB 78.3629%-127 - C1 -4AYW 5.1 ABCBA_HUMAN
12 PsiBlast_PDB 77.6330%-105 - C1 -3B60 - MSBA_SALTY -
81 Fugue 76.8429%-107 - C1 -3B60 - MSBA_SALTY -
92 HHSearch 76.8130%-107 - C1 -3B60 - MSBA_SALTY -
94 HHSearch 74.6726%-110 - C1 -3WMG - ? -
83 Fugue 70.2027%-113 - C1 -4F4C - PGP1_CAEEL -
15 PsiBlast_PDB 69.5033%-111 - C1 -4RY2 - ? -
7 PsiBlast_PDB 66.1130%-108 - C1 -4A82 - Y1866_STAAM -
16 PsiBlast_PDB 65.9733% -95 - C1 -4S0F 2.4 ?
24 PsiBlast_CBE 65.2033%-100 - C1 -4S0F 1.9 ?
46 PsiBlast_CBE 58.6342%-112 - C1 -2FGJ 6.6 HLYBP_ECOLX
51 PsiBlast_CBE 58.1142%-116 - C1 -1XEF 6.5 HLYBP_ECOLX
47 PsiBlast_CBE 57.6842%-121 - C1 -2FFA 6.7
37 PsiBlast_CBE 57.6742%-116 - C1 -2FGK 6.9 HLYBP_ECOLX
43 PsiBlast_CBE 57.2742%-118 - C1 -2FGJ 6.2
50 PsiBlast_CBE 57.1742%-115 - C1 -1XEF 6.9 HLYBP_ECOLX
30 PsiBlast_CBE 56.9743%-117 - C1 -2PMK 7.0
44 PsiBlast_CBE 56.8342%-112 - C1 -2FGJ 6.8 HLYBP_ECOLX
35 PsiBlast_CBE 56.7942%-115 - C1 -2FGK 6.3 HLYBP_ECOLX
31 PsiBlast_CBE 56.6642%-120 - C1 -2FF7 6.8
34 PsiBlast_CBE 56.6442%-117 - C1 -2FGK 7.0
49 PsiBlast_CBE 56.5242%-118 - C1 -1XEF 7.0 HLYBP_ECOLX
48 PsiBlast_CBE 56.2042%-113 - C1 -1XEF 7.0
36 PsiBlast_CBE 56.0742%-117 - C1 -2FGK 6.9 HLYBP_ECOLX
33 PsiBlast_CBE 55.0643%-117 - C1 -3B5J 7.2
45 PsiBlast_CBE 55.0542%-113 - C1 -2FGJ 7.0 HLYBP_ECOLX
26 PsiBlast_CBE 53.3440%-102 - C1 -3NHB 6.4
27 PsiBlast_CBE 52.2240% -98 - C1 -3NHA 6.5
56 PsiBlast_CBE 51.7639%-112 - C1 -5DGX 6.5 ?
59 PsiBlast_CBE 51.2633%-107 - C1 -1JJ7 6.2