@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1443: (2015-12-08 )
MIYFDNSATTIPYPEVLRTYQEVASKIYGNPSSLHELGTTSSRILEASRKQIASLLELKANEIFFTSGGTEADNWVIKGLAFEKQHFGNHIIVSDIEHPAIKESAKWLGEYGFEIDYAPVDDKGFVDVEALVKLIKPETILISIMAINNEIGSIQPIKAISDLLSDKPTISFHIDAVQAIGKIPTKDYLTERVDFASFSSHKFHGVRGVGFLYIKEGKRISPLLTGGGQESDLRSTTENVAGIAATAKALRMVMDKEVVAIPKISKMKTIIHDELAKYEDITLFSGKEDFSPNIITFGIKGVRGEVLVHAFEGHDIFISTTSACSSKAGKPAGTLIAMGISTKLAQTAVRISLDDDNDMGQVEQFLTIFKQVYEKTKKVRG

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLP_C_3(1ECX)
?
[Raw transfer]



PLP_C_3(1ECX)
?
[Raw transfer]



PLP_D_4(1ECX)
?
[Raw transfer]



PLP_A_3(3VAX)
?
[Raw transfer]



PLP_A_3(3VAX)
?
[Raw transfer]



PLP_B_4(3VAX)
?
[Raw transfer]



PLP_A_6(1EG5)
?
[Raw transfer]



PLP_A_6(1EG5)
?
[Raw transfer]



PLP_A_3(3A9Z)
SCLY_RAT
[Raw transfer]



PLP_A_3(3A9Z)
SCLY_RAT
[Raw transfer]



PLP_A_3(3A9X)
SCLY_RAT
[Raw transfer]



CYS_F_6(1ECX)
?
[Raw transfer]



CYS_E_5(1ECX)
?
[Raw transfer]



CSS_F_6(1ELU)
?
[Raw transfer]
53 Fugue 93.7038% -91 * C1 *1ECX 3.7 ?
2 PsiBlast_PDB 92.5739% -91 - C1 -1EG5 4.0 ?
1 PsiBlast_PDB 92.2939% -92 - C1 -1ECX 3.9 ?
30 HHSearch 92.0039% -86 - C1 -1EG5 4.0 ?
21 PsiBlast_CBE 91.6739% -91 - C1 -1ECX 4.0 ?
6 PsiBlast_PDB 88.3632% -84 - C1 -4EB7 - ISCS2_ARCFU -
5 PsiBlast_PDB 88.1932% -84 - C1 -4EB5 - ISCS2_ARCFU -
7 PsiBlast_PDB 88.0932% -88 - C1 -4HVK - ISCS2_ARCFU -
24 PsiBlast_CBE 87.9332% -88 - C1 -4EB5 - ISCS2_ARCFU -
23 PsiBlast_CBE 86.8232% -85 - C1 -4EB7 - ISCS2_ARCFU -
54 Fugue 83.7630% -78 - C1 -4ISY - ISCSL_MYCTU -
22 PsiBlast_CBE 83.3335% -85 - C1 -3LVJ - ISCS_ECO57 -
3 PsiBlast_PDB 83.1535% -86 - C1 -3LVJ - ISCS_ECO57 -
4 PsiBlast_PDB 81.6135% -85 - C1 -3LVK - ISCS_ECO57 -
14 PsiBlast_PDB 80.9829% -79 - C1 -3GZD - SCLY_HUMAN -
8 PsiBlast_PDB 80.7731% -77 - C1 -4ISY - ISCSL_MYCTU -
12 PsiBlast_PDB 80.5532% -87 - C1 -4IXO - ? -
25 PsiBlast_CBE 80.3231% -76 - C1 -4ISY - ISCSL_MYCTU -
13 PsiBlast_PDB 80.0729% -78 - C1 -3GZC - SCLY_HUMAN -
27 PsiBlast_CBE 80.0431% -75 - C1 -4ISY - ISCSL_MYCTU -
11 PsiBlast_PDB 79.8430% -82 - C1 -3A9Z 4.0 SCLY_RAT
10 PsiBlast_PDB 79.2830% -83 - C1 -3A9X 4.4 SCLY_RAT
35 HHSearch 78.6931% -71 - C1 -3A9Z 4.0 SCLY_RAT
28 PsiBlast_CBE 72.5531% -80 - C1 -3VAX 3.8 ?
32 HHSearch 71.1830% -75 - C1 -3VAX 3.8 ?
9 PsiBlast_PDB 69.9031% -80 - C1 -3VAX 3.8 ?