@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1455: (2015-12-08 )
MNSINIAIDGPASSGKSTVAKIIAKNLNYTYLDTGAMYRCATYLALQHGYEAQDVSKILGLLAERPISFGKAEDGSQTVFIGTEEVTLAIRQNDVTNNVSWVSAIPEIREELVNQQRRIAKDGAIIMDGRDIGTVVLPDAELKIFLVASVDERAERRFKENQEKGIESDFETLKSEIAARDYKDSHREVSPLKAAEDAIEFDTTGVSIEGVVTFIQEKAEKIIDMKN

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

C_E_5(1KDP)
KCY_ECOLI
[Raw transfer]



CDP_D_4(2CMK)
KCY_ECOLI
[Raw transfer]



CAR_F_6(1KDR)
KCY_ECOLI
[Raw transfer]



C5P_H_8(2H92)
KCY_STAAW
[Raw transfer]



C_H_8(1KDO)
KCY_ECOLI
[Raw transfer]



C_I_9(1KDO)
KCY_ECOLI
[Raw transfer]



CAR_G_7(1KDR)
KCY_ECOLI
[Raw transfer]



C_F_6(1KDP)
KCY_ECOLI
[Raw transfer]



C5P_G_7(2H92)
KCY_STAAW
[Raw transfer]



C5P_I_9(2H92)
KCY_STAAW
[Raw transfer]



C5P_G_7(2H92)
KCY_STAAW
[Raw transfer]



DC_C_3(2FEO)
KCY_ECOLI
[Raw transfer]



DOC_F_6(1KDT)
KCY_ECOLI
[Raw transfer]



C5P_B_7(4DIE)
?
[Raw transfer]



DOC_G_7(1KDT)
KCY_ECOLI
[Raw transfer]



C5P_C_9(4DIE)
?
[Raw transfer]



C5P_A_5(4DIE)
?
[Raw transfer]



C5P_D_11(4DIE)
?
[Raw transfer]



ADP_A_3(3AKC)
KCY_THET8
[Raw transfer]



DPO_A_2(3R20)
?
[Raw transfer]
1 PsiBlast_PDB 93.6866% -97 - C3 -1Q3T - KCY_STRPN -
6 PsiBlast_PDB 80.6439%-101 - C3 -4E22 - KCY_YERPY -
79 HHSearch 79.7242% -89 * C3 *3R20 2.9 ?
98 Fugue 79.5438% -89 - C3 -1CKE - KCY_ECOLI -
4 PsiBlast_PDB 79.3545%-106 - C3 -4DIE 5.0 ?
25 PsiBlast_CBE 79.2645%-105 - C3 -4DIE 6.0 ?
23 PsiBlast_CBE 78.6545%-107 - C3 -4DIE 5.6 ?
3 PsiBlast_PDB 78.1445%-104 - C3 -3R8C - ? -
24 PsiBlast_CBE 77.7845%-101 - C3 -4DIE 5.5 ?
78 HHSearch 77.6639% -90 - C3 -1CKE - KCY_ECOLI -
80 HHSearch 77.6350% -84 - C3 -2H92 8.4 KCY_STAAW
12 PsiBlast_PDB 76.5741% -93 - C3 -2FEM - KCY_ECOLI -
14 PsiBlast_PDB 75.3541% -90 - C3 -1CKE - KCY_ECOLI -
28 PsiBlast_CBE 75.2942% -83 - C3 -1KDP 6.0 KCY_ECOLI
7 PsiBlast_PDB 75.2342% -86 - C3 -2CMK 5.8 KCY_ECOLI
21 PsiBlast_CBE 75.0450% -76 - C3 -2H92 9.3 KCY_STAAW
26 PsiBlast_CBE 74.2942% -81 - C3 -1KDT 4.9 KCY_ECOLI
11 PsiBlast_PDB 74.2642% -79 - C3 -1KDT 6.2 KCY_ECOLI
8 PsiBlast_PDB 74.0142% -76 - C3 -1KDO 8.7 KCY_ECOLI
9 PsiBlast_PDB 73.9742% -76 - C3 -1KDP 7.6 KCY_ECOLI
2 PsiBlast_PDB 73.9750% -75 - C3 -2H92 8.4 KCY_STAAW
29 PsiBlast_CBE 73.9242% -84 - C3 -1KDO 8.7 KCY_ECOLI
22 PsiBlast_CBE 73.2150% -76 - C3 -2H92 8.5 KCY_STAAW
10 PsiBlast_PDB 72.9842% -82 - C3 -1KDR 5.3 KCY_ECOLI
27 PsiBlast_CBE 72.6642% -78 - C3 -1KDR 5.2 KCY_ECOLI
13 PsiBlast_PDB 70.7441% -81 - C3 -2FEO 4.5 KCY_ECOLI
15 PsiBlast_PDB 63.2630% -78 - C3 -3AKC 7.5 KCY_THET8