@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1523: (2015-12-08 )
MRVIKVKTISETLDYISKHTASVARFGDGEIDIIAGNSIPYQVYDSELAKRLERLLNRQSNEKLVICVSDVFDNLGRYNDFSQQFWRDHLYQYNDLYQKNCQAEWYGSTFISRPYMDLLDKSLSVTYFEQLKALWKNKDILIVEGETSRSGVGNDLFNDANTISRIICPSKDAFSSFYEIKETILEHSRGKLILLMLGPTAKLLAEDLSQLGHQAIDLGHIDSEYEWFKMGAVSKVKLSHKHTAEHNFDEDITLIEDNSYENQIVSKIGTSDRQYALTVTLTDDIWELEHLLQRCPNTNFHIAAPVYCSDRLKQLVGYPNYYLHEAITEEQFEVLLLNSDIYLDINHGEEVWNVVDRCITEGKTIYGIRRARKDNQYISFERTMDDFEYLCDTIKQNR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UDP_A_2(4PHR)
?
[Raw transfer]




UDP_A_2(4PFX)
?
[Raw transfer]




UDP_A_2(4PFX)
?
[Raw transfer]




UDP_A_2(4PHR)
?
[Raw transfer]




UDP_A_2(4PHS)
?
[Raw transfer]




30 Fugue 97.6157% -88 - C7 -4PHR 8.6 ?
29 Fugue 97.0057% -88 - C7 -4PFX 9.9 ?
2 PsiBlast_PDB 95.6257% -86 - C7 -4PHR 8.6 ?
1 PsiBlast_PDB 94.9057% -86 - C7 -4PFX 9.9 ?
3 PsiBlast_PDB 70.6057% 7 - C7 -4PHS Error ?
16 HHSearch 53.0514% -88 - C7 -1V4V - ? -
17 HHSearch 52.5914% -79 - C7 -3OT5 - ? -
21 HHSearch 51.3213% -93 - C7 -2X6Q - TRET_PYRHO -
33 Fugue 51.2618% -18 - C4 -4J3R - ? -
28 HHSearch 50.9214% -82 * C7 *2JJM - BSHA_BACAN -
24 HHSearch 50.459% -84 - C7 -3T5T - ? -
27 HHSearch 49.5215% -65 - C7 -1UQT - OTSA_ECOLI -
12 HHSearch 48.7410% -70 - C7 -2HY7 - GUMK_XANCE -
22 HHSearch 48.0715% -77 - C7 -2BFW - ? -
13 HHSearch 47.9412% -84 - C7 -2IUY - ? -
35 Fugue 47.9021% -8 - C3 -4X2Z - -
14 HHSearch 47.7510% -78 - C7 -2X0D - ? -
11 HHSearch 47.4815% -82 - C7 -3DZC - ? -
18 HHSearch 46.378% -40 - C7 -2XCI - KDTA_AQUAE -
36 Fugue 43.8017% -35 - C6 -4O6D - ? -