@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1531: (2015-12-08 )
MIDRKDTNRFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIAQVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNNLVDIQFERNDIDFQRGKFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGRVLGEVEHLAIFPATHFMTNDEHMEEAISKIQAEMENQVELFEKEGKLIEAQRIRQRTEYDIEMLREMGYTNGVENYSRHMDGRSEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTDTVVEQIIRPTGLLDPEVEVRPSMGQMDDLLGEINLRTEKGERTFITTLTKRMAEDLTDYLKEMGVKVKYMHSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSNGHVIMYADKITDSMQRAMDETARRRRLQMDYNEKHGIVPQTIKKEIRDLIAITKSNDSDKPEKVVDYSSLSKKERQAEIKALQQQMQEAAELLDFELAAQIRDVILELKAID

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FLQ_C_5(2FDC)
UVRB_BACCA
[Raw transfer]



NACID_C_1(2FDC)
UVRB_BACCA
[Raw transfer]
-
NACID_D_2(2FDC)
UVRB_BACCA
[Raw transfer]
-
NACID_D_1(2NMV)
?
[Raw transfer]
-
NACID_D_1(2D7D)
UVRB_BACSU
[Raw transfer]
-
NACID_D_1(2D7D)
UVRB_BACSU
[Raw transfer]
-
CHAIN_D_4(3V4R)
UVRB_BACSU
[Raw transfer]
-
CHAIN_C_3(3V4R)
?
[Raw transfer]
-
54 HHSearch 90.5168% -91 - C4 -2D7D 8.8 UVRB_BACSU
5 PsiBlast_PDB 90.2067% -91 - C4 -2D7D 8.8 UVRB_BACSU
6 PsiBlast_PDB 89.2267% -89 - C4 -2NMV 7.7 ?
22 PsiBlast_CBE 88.0068% -91 - C4 -1T5L - UVRB_BACCA -
2 PsiBlast_PDB 87.6868% -89 - C4 -3UWX - ? -
3 PsiBlast_PDB 87.5668% -89 - C4 -1T5L - UVRB_BACCA -
7 PsiBlast_PDB 86.4367% -91 - C4 -3V4R 10.8 UVRB_BACSU
21 PsiBlast_CBE 86.2668% -89 - C4 -2FDC 17.9 UVRB_BACCA
23 PsiBlast_CBE 86.0167% -91 - C4 -3V4R 13.2 ?
80 Fugue 85.5271% -77 - C4 -1D9X - UVRB_BACCA -
8 PsiBlast_PDB 84.4568% -78 - C4 -1D9X - UVRB_BACCA -
4 PsiBlast_PDB 83.6868% -75 - C4 -1D9Z - UVRB_BACCA -
1 PsiBlast_PDB 83.6368% -86 - C4 -2FDC 12.8 UVRB_BACCA
79 Fugue 81.6858% -81 - C4 -1D2M - UVRB_THET8 -
81 Fugue 67.5469% -80 - C4 -1D9X - UVRB_BACCA -
82 Fugue 49.9320% -50 - C4 -2EYQ - MFD_ECOLI -
56 HHSearch 46.4819% -54 - C4 -3HJH - MFD_ECOLI -
83 Fugue 45.9618% -53 - C4 -3HJH - MFD_ECOLI -
88 Fugue 43.3416% -43 - C3 -1WP9 - ? -
84 Fugue 43.1065% -54 - C4 -1D9X - UVRB_BACCA -