@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1542: (2015-12-08 )
METYTLSNTLNIPKIGFGTWQLTEGEEAYKAVTHALKVGYTHIDTAQIYGNEHSVGRAIRDSGLARESIFLTTKIWNDKHDYHLAKASIDESLQKLGVDYIDLLLIHWPNPKALRENDAWKAGNAGTWKAMEEAYKEGKVKAIGVSNFMKHHLEALFETAEIKPMVNQIILAPGCAQEDLVRFCKGNDILLEAYSPFGTGAIFENESIKAIAEKYGKSVAQVALRWSLDNGFLPLPKSATPKNIEANLDIFDFQLNEDDITTLIQLDSGIKPKDPDNVSF

Atome Classification :

(35 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_A_3(4G5D)
PGFS_LEIMA
[Raw transfer]




NAP_A_3(4GIE)
PGFS_TRYCC
[Raw transfer]




NAP_B_4(1VP5)
?
[Raw transfer]




NAP_A_3(1VP5)
?
[Raw transfer]




NDP_B_4(4G5D)
PGFS_LEIMA
[Raw transfer]




NDP_B_6(3WBW)
?
[Raw transfer]




NDP_A_3(3D3F)
GR_BACSU
[Raw transfer]




NDP_B_4(3D3F)
GR_BACSU
[Raw transfer]




NDP_A_4(3WBW)
?
[Raw transfer]




NAP_C_3(1VBJ)
PGFS_TRYBB
[Raw transfer]




NAP_C_3(1VBJ)
PGFS_TRYBB
[Raw transfer]




NAP_D_4(1VBJ)
PGFS_TRYBB
[Raw transfer]




NAP_B_7(3KRB)
?
[Raw transfer]




NAP_A_3(3KRB)
?
[Raw transfer]




NAP_A_3(3KRB)
?
[Raw transfer]




EDO_B_20(4F40)
PGFS_LEIMA
[Raw transfer]




GLU_A_3(4FZI)
PGFS_TRYCC
[Raw transfer]




GOL_C_10(3O0K)
?
[Raw transfer]




GOL_D_12(3O0K)
?
[Raw transfer]




GOL_I_9(1MZR)
DKGA_ECOLI
[Raw transfer]




CIT_E_5(1VBJ)
PGFS_TRYBB
[Raw transfer]




GLU_B_4(4FZI)
PGFS_TRYCC
[Raw transfer]




GOL_D_12(3O0K)
?
[Raw transfer]




GOL_D_12(3O0K)
?
[Raw transfer]




CIT_F_6(1VBJ)
PGFS_TRYBB
[Raw transfer]




GOL_C_10(3O0K)
?
[Raw transfer]




C2U_A_7(3CV7)
AK1A1_PIG
[Raw transfer]




EDO_A_12(4F40)
PGFS_LEIMA
[Raw transfer]




EDO_B_23(4F40)
PGFS_LEIMA
[Raw transfer]




27 PsiBlast_CBE 95.6942% -94 - C6 -4FZI 2.7 PGFS_TRYCC
5 PsiBlast_PDB 94.9742% -92 - C6 -4FZI 2.8 PGFS_TRYCC
6 PsiBlast_PDB 94.0342% -92 - C6 -4GIE 10.6 PGFS_TRYCC
34 PsiBlast_CBE 93.0444% -96 - C6 -4Q3M - ? -
21 PsiBlast_CBE 92.9146% -83 - C6 -4G5D 13.0 PGFS_LEIMA
2 PsiBlast_PDB 92.7546% -83 - C6 -4G5D 10.6 PGFS_LEIMA
33 PsiBlast_CBE 92.6644% -95 - C6 -4Q3M - ? -
32 PsiBlast_CBE 92.6144% -94 - C6 -4Q3M - ? -
36 PsiBlast_CBE 92.5543% -93 - C6 -3B3D - YTBE_BACSU -
35 PsiBlast_CBE 92.4443% -92 - C6 -3B3D - YTBE_BACSU -
29 PsiBlast_CBE 91.9944% -92 - C6 -3D3F 9.8 GR_BACSU
31 PsiBlast_CBE 91.8644% -94 - C6 -4Q3M - ? -
42 PsiBlast_CBE 91.8040% -93 - C6 -1VP5 12.1 ?
1 PsiBlast_PDB 91.7546% -82 - C6 -4F40 2.5 PGFS_LEIMA
8 PsiBlast_PDB 91.7044% -88 - C6 -3D3F 9.1 GR_BACSU
22 PsiBlast_CBE 91.6046% -85 - C6 -4F40 3.1 PGFS_LEIMA
28 PsiBlast_CBE 91.3444% -92 - C6 -3F7J - GR_BACSU -
10 PsiBlast_PDB 91.3243% -92 - C6 -3B3D - YTBE_BACSU -
106 HHSearch 91.2944% -85 - C6 -3B3D - YTBE_BACSU -
17 PsiBlast_PDB 91.2240% -94 - C6 -1VP5 11.9 ?
105 HHSearch 90.8246% -88 * C6 *1VBJ 12.0 PGFS_TRYBB
4 PsiBlast_PDB 89.9144% -95 - C6 -1VBJ 11.9 PGFS_TRYBB
26 PsiBlast_CBE 89.1844% -90 - C6 -1VBJ 10.8 PGFS_TRYBB
24 PsiBlast_CBE 88.5647% -88 - C6 -3O0K 2.8 ?
107 HHSearch 88.1148% -93 - C6 -3O0K 2.7 ?
23 PsiBlast_CBE 87.6547% -87 - C6 -3O0K 2.7 ?
3 PsiBlast_PDB 87.0147% -88 - C6 -3O0K 2.7 ?
25 PsiBlast_CBE 86.9147% -87 - C6 -3O0K 2.7 ?
54 PsiBlast_CBE 86.8237% -79 - C6 -3KRB 11.8 ?
53 PsiBlast_CBE 86.4337% -81 - C6 -3KRB 11.6 ?
117 HHSearch 86.1538% -70 - C6 -3KRB 12.2 ?
39 PsiBlast_CBE 85.2839% -82 - C6 -3WBW 11.0 ?
11 PsiBlast_PDB 84.8640% -85 - C6 -1MZR 2.9 DKGA_ECOLI
12 PsiBlast_PDB 84.5239% -83 - C6 -3WBW 11.6 ?
51 PsiBlast_CBE 82.2033% -91 - C6 -3CV7 3.9 AK1A1_PIG