@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1560: (2015-12-08 )
MTFKSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPKTALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKIDKVHPDQLLEQIDDFRSQMDFKEVVPISALQGNNVPTLIKLLTDNLEEGFQYFPEDQITDHPERFLVSEMVREKVLHLTQQEVPHSVAVVVESMKRDEETDKVHIRATIMVERDSQKGIIIGKQGAMLKKIGKMARRDIELMLGDKVYLETWVKVKKNWRDKKLDLADFGYNEKEY

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GNP_A_5(3R9X)
ERA_AQUAE
[Raw transfer]




GDP_B_10(3IEU)
ERA_ECOLI
[Raw transfer]




GDP_A_3(3IEU)
ERA_ECOLI
[Raw transfer]




GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]




GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]




GNP_A_4(3R9W)
ERA_AQUAE
[Raw transfer]




GNP_A_3(1WF3)
ERA_THET8
[Raw transfer]




GNP_A_3(1WF3)
ERA_THET8
[Raw transfer]




GDP_B_8(4KYU)
DER_BACSU
[Raw transfer]




GDP_A_3(4KYU)
DER_BACSU
[Raw transfer]




67 HHSearch 96.1047%-106 - C1 -3IEV 10.6 ERA_AQUAE
3 PsiBlast_PDB 95.5946%-108 - C1 -3IEV 10.6 ERA_AQUAE
2 PsiBlast_PDB 94.0746%-108 - C1 -3R9X 10.1 ERA_AQUAE
1 PsiBlast_PDB 93.7046%-111 - C1 -3R9W 10.6 ERA_AQUAE
6 PsiBlast_PDB 91.2043%-115 - C1 -3IEU 7.9 ERA_ECOLI
22 PsiBlast_CBE 90.7843%-116 - C1 -1EGA - ERA_ECOLI -
21 PsiBlast_CBE 90.6543%-114 - C1 -3IEU 8.0 ERA_ECOLI
4 PsiBlast_PDB 89.3743%-111 - C1 -1EGA - ERA_ECOLI -
65 HHSearch 88.7143%-108 - C1 -1EGA - ERA_ECOLI -
8 PsiBlast_PDB 86.6538% -96 - C1 -1WF3 10.5 ERA_THET8
66 HHSearch 86.3939% -90 - C1 -1WF3 10.5 ERA_THET8
55 Fugue 67.7544%-111 - C1 -1EGA - ERA_ECOLI -
17 PsiBlast_PDB 67.3728%-128 - C1 -3PR1 - ENGB_THEMA -
16 PsiBlast_PDB 66.4828%-119 - C1 -3PQC - ENGB_THEMA -
23 PsiBlast_CBE 65.3231%-131 - C1 -4KYU 7.0 DER_BACSU
82 HHSearch 64.0028%-103 - C1 -3PQC - ENGB_THEMA -
13 PsiBlast_PDB 62.4431%-113 - C1 -4KYU 5.9 DER_BACSU
86 HHSearch 61.5727%-104 - C1 -2DYK - ? -
57 Fugue 61.0724% -82 - C1 -1XZP - MNME_THEMA -
18 PsiBlast_PDB 60.9027%-109 - C1 -2DYK - ? -