@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1572: (2015-12-09 )
MEPKYQRILIKLSGEALAGDKGVGIDIPTVQSIAKEIAEVHNSGVQIALVIGGGNLWRGEPAAEAGMDRVQADYTGMLGTVMNALVMADSLQQYGVDTRVQTAIPMQTVAEPYVRGRALRHLEKDRIVVFGAGIGSPYFSTDTTAALRAAEIEAEAILMAKNGVDGVYNADPKKDANAVKFDELTHVEVIKRGLKIMDATASTISMDNDIDLVVFNMNETGNIKRVVLGEQIGTTVSNKASE

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UDP_B_13(2BND)
PYRH_ECOLI
[Raw transfer]




UDP_A_7(2BND)
PYRH_ECOLI
[Raw transfer]




UTP_A_3(2BNF)
PYRH_ECOLI
[Raw transfer]




U5P_A_7(2BNE)
PYRH_ECOLI
[Raw transfer]




U5P_B_10(2BNE)
PYRH_ECOLI
[Raw transfer]




U5P_A_7(2BNE)
PYRH_ECOLI
[Raw transfer]




GOL_A_4(4A7W)
PYRH_HELPY
[Raw transfer]




GOL_B_6(4A7W)
PYRH_HELPY
[Raw transfer]




GOL_A_5(1YBD)
PYRH_NEIMB
[Raw transfer]




GOL_A_5(1YBD)
PYRH_NEIMB
[Raw transfer]




61 HHSearch 98.3993%-129 - C1 -1Z9D - PYRH_STRP1 -
1 PsiBlast_PDB 97.1888%-129 - C1 -1Z9D - PYRH_STRP1 -
51 Fugue 89.0585%-125 - C1 -1Z9D - PYRH_STRP1 -
27 PsiBlast_CBE 84.8350%-115 - C1 -3EK5 - PYRH_XANCP -
28 PsiBlast_CBE 83.7950%-116 - C1 -3EK5 - PYRH_XANCP -
3 PsiBlast_PDB 83.6750%-127 - C- -3EK5 - PYRH_XANCP -
26 PsiBlast_CBE 83.4150%-115 - C1 -3EK5 - PYRH_XANCP -
4 PsiBlast_PDB 82.8850%-114 - C1 -3EK6 - PYRH_XANCP -
59 HHSearch 82.7251%-115 - C1 -3EK6 - PYRH_XANCP -
29 PsiBlast_CBE 82.4350%-113 - C1 -3EK5 - PYRH_XANCP -
25 PsiBlast_CBE 81.5150%-127 - C- -3EK5 - PYRH_XANCP -
34 PsiBlast_CBE 80.1347%-121 - C1 -2V4Y - PYRH_ECOLI -
32 PsiBlast_CBE 79.8347%-122 - C1 -2V4Y - PYRH_ECOLI -
33 PsiBlast_CBE 79.8247%-126 - C1 -2V4Y - PYRH_ECOLI -
50 Fugue 79.7346%-119 - C1 -2BNE 5.8 PYRH_ECOLI
35 PsiBlast_CBE 79.4347%-124 - C1 -2V4Y - PYRH_ECOLI -
6 PsiBlast_PDB 79.3847%-121 - C1 -2BNE 5.8 PYRH_ECOLI
30 PsiBlast_CBE 79.2047%-116 - C1 -2BND 7.3 PYRH_ECOLI
7 PsiBlast_PDB 79.1347%-122 - C1 -2V4Y - PYRH_ECOLI -
21 PsiBlast_CBE 79.0753%-127 - C1 -3NWY - PYRH_MYCTU -
9 PsiBlast_PDB 79.0544%-120 - C1 -2BNF 7.7 PYRH_ECOLI
5 PsiBlast_PDB 78.9747%-117 - C1 -2BND 7.7 PYRH_ECOLI
36 PsiBlast_CBE 77.4347%-112 - C1 -2BNE 5.5 PYRH_ECOLI
60 HHSearch 74.2646%-114 * C1 *1YBD 2.9 PYRH_NEIMB
11 PsiBlast_PDB 74.0245%-118 - C1 -1YBD 2.9 PYRH_NEIMB
43 PsiBlast_CBE 72.7845%-125 - C1 -4A7W 2.6 PYRH_HELPY
12 PsiBlast_PDB 71.9145%-123 - C1 -4A7W 3.2 PYRH_HELPY