@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1612: (2015-12-09 )
MVNTKTLLPYKTMPVWTAQSIPKAFLEKHNTKEGTWAKLTILSGSLVFYQLSPDGEEISRHIFDASSDIPFVDPQVWHKVSPNSPDLSCYLTFYCQKEDYFHKKYGLTRTHSEVIASAPLLSEKSNILDLGCGQGRNSLYLSLLGHQVTSVDSNGQSLVALENMALEEELPYNIKRYDINTAAIEGHYDFILSTVVFIFLNPDCISDIILQMQSHTQIGGYNLIVSAMDTAENPCPLPFPFTFKEGQLKSYYNDWEIIKYNENLGELHRVDENGNRLKLQFATLLARKLRS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SFG_A_5(2XVA)
TEHB_ECOLI
[Raw transfer]




SFG_D_10(2XVA)
TEHB_ECOLI
[Raw transfer]




SFG_B_6(2XVA)
TEHB_ECOLI
[Raw transfer]




SFG_C_8(2XVA)
TEHB_ECOLI
[Raw transfer]




SAH_A_3(2XVM)
TEHB_ECOLI
[Raw transfer]




SAH_A_3(2XVM)
TEHB_ECOLI
[Raw transfer]




SAH_B_4(2XVM)
TEHB_ECOLI
[Raw transfer]




NHE_B_7(4DQ0)
?
[Raw transfer]




NHE_C_9(4DQ0)
?
[Raw transfer]




NHE_B_6(4DQ0)
?
[Raw transfer]




NHE_B_7(4DQ0)
?
[Raw transfer]




NHE_C_9(4DQ0)
?
[Raw transfer]




25 PsiBlast_CBE 83.2152%-100 - C1 -2XVA 7.1 TEHB_ECOLI
24 PsiBlast_CBE 83.0952%-101 - C1 -2XVM 6.6 TEHB_ECOLI
4 PsiBlast_PDB 82.6552%-102 - C1 -2XVM 7.3 TEHB_ECOLI
21 PsiBlast_CBE 82.1752%-100 - C1 -4DQ0 2.2 ?
26 PsiBlast_CBE 82.0852% -97 - C1 -2XVA 7.1 TEHB_ECOLI
3 PsiBlast_PDB 81.9052%-100 - C1 -2XVA 7.2 TEHB_ECOLI
27 PsiBlast_CBE 81.8152% -98 - C1 -2XVA 7.2 TEHB_ECOLI
23 PsiBlast_CBE 81.4052%-103 - C1 -4DQ0 2.7 ?
2 PsiBlast_PDB 80.0052% -97 - C1 -4DQ0 3.6 ?
22 PsiBlast_CBE 79.9952%-101 * C1 *4DQ0 2.6 ?
78 HHSearch 77.0152% -99 - C1 -2XVM 7.3 TEHB_ECOLI
75 HHSearch 60.7256% -7 - C1 -3M70 - TEHB_HAEIN -
1 PsiBlast_PDB 59.6656% -7 - C1 -3M70 - TEHB_HAEIN -
71 Fugue 52.6116% -58 - C1 -3E23 - ? -
88 HHSearch 51.5816% -77 - C1 -2P8J - ? -
91 HHSearch 47.4117% -60 - C1 -1Y8C - ? -
87 HHSearch 46.8418% -66 - C1 -3DLI - ? -
69 Fugue 46.4516% -69 - C1 -3H2B - ? -
90 HHSearch 45.8017% -89 - C1 -3DH0 - ? -
79 HHSearch 45.8014% -82 - C1 -2GB4 - TPMT_MOUSE -