@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1616: (2015-12-09 )
MKLISWNIDSLNAALTSESTRALMSRQVIDTLVAEDADIIAIQETKLSAKGPTKKHLEVLETYFPEYDLVWRSSVEPARKGYAGTMFLYRKGLNPIVSFPEIDAPTTMDNEGRIITLELENCYITQVYTPNAGDGLKRLGDRQIWDIKYAEYLATLDSQKPVLATGDYNVAHKEIDLANPSSNRRSAGFTDEERQGFTNLLAKGFTDTFRYLHGDVPNVYSWWAQRSRTSKINNTGWRIDYWLTSNRVADKITKSEMIHSGDRQDHTPIILEIEL

Atome Classification :

(42 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PEG_A_10(3W2Y)
?
[Raw transfer]



FMT_A_13(3W2Y)
?
[Raw transfer]



NACID_I_3(3G2C)
?
[Raw transfer]
-
NACID_X_1(1DE8)
APEX1_HUMAN
[Raw transfer]
-
GOL_B_23(3GA6)
?
[Raw transfer]



NACID_I_3(3G2C)
?
[Raw transfer]
-
NACID_G_3(3G0R)
?
[Raw transfer]
-
NACID_H_5(3GA6)
?
[Raw transfer]
-
MPD_B_12(3G00)
?
[Raw transfer]



NACID_I_3(3G3Y)
?
[Raw transfer]
-
FMT_A_5(3W2X)
?
[Raw transfer]



GOL_A_5(3G38)
?
[Raw transfer]



NACID_U_3(1DEW)
APEX1_HUMAN
[Raw transfer]
-
NACID_H_3(3G4T)
?
[Raw transfer]
-
NACID_H_5(3G2D)
?
[Raw transfer]
-
NACID_H_3(3G00)
?
[Raw transfer]
-
NACID_O_15(4IEM)
APEX1_HUMAN
[Raw transfer]
-
NACID_L_11(4IEM)
APEX1_HUMAN
[Raw transfer]
-
NACID_I_7(4IEM)
APEX1_HUMAN
[Raw transfer]
-
NACID_H_3(3G3C)
?
[Raw transfer]
-
NACID_X_1(1DEW)
APEX1_HUMAN
[Raw transfer]
-
NACID_U_3(1DE8)
APEX1_HUMAN
[Raw transfer]
-
NACID_Y_2(1DE9)
APEX1_HUMAN
[Raw transfer]
-
NACID_K_4(3G0R)
?
[Raw transfer]
-
FMT_A_5(3W2Y)
?
[Raw transfer]



NACID_F_3(3GA6)
?
[Raw transfer]
-
NACID_V_5(1DE9)
APEX1_HUMAN
[Raw transfer]
-
NACID_I_4(3G4T)
?
[Raw transfer]
-
NACID_U_4(1DE9)
APEX1_HUMAN
[Raw transfer]
-
NACID_I_4(3G00)
?
[Raw transfer]
-
NACID_I_4(3G3C)
?
[Raw transfer]
-
NACID_G_2(3G38)
?
[Raw transfer]
-
NACID_X_1(1DE9)
APEX1_HUMAN
[Raw transfer]
-
NACID_K_4(3G2D)
?
[Raw transfer]
-
34 PsiBlast_CBE 96.3136% -69 - C2 -4IEM Error APEX1_HUMAN
35 PsiBlast_CBE 96.2136% -67 - C2 -4IEM Error APEX1_HUMAN
14 PsiBlast_PDB 95.9236% -68 - C2 -2O3H - APEX1_HUMAN -
11 PsiBlast_PDB 95.9236% -66 - C2 -1DE8 7.9 APEX1_HUMAN
10 PsiBlast_PDB 95.8436% -67 - C2 -1BIX - APEX1_HUMAN -
21 PsiBlast_CBE 95.7838% -69 - C2 -2O3C - APEX1_DANRE -
8 PsiBlast_PDB 95.7536% -75 - C2 -3U8U - APEX1_HUMAN -
1 PsiBlast_PDB 95.5638% -69 - C2 -2O3C - APEX1_DANRE -
25 PsiBlast_CBE 95.4336% -70 - C2 -3U8U - APEX1_HUMAN -
32 PsiBlast_CBE 95.4136% -66 - C2 -1DE9 6.4 APEX1_HUMAN
31 PsiBlast_CBE 95.3936% -69 - C2 -1DEW 7.3 APEX1_HUMAN
28 PsiBlast_CBE 95.1036% -64 - C2 -3U8U - APEX1_HUMAN -
4 PsiBlast_PDB 95.0236% -62 - C2 -4QHE - APEX1_HUMAN -
3 PsiBlast_PDB 94.9836% -68 - C2 -4QHD - APEX1_HUMAN -
37 PsiBlast_CBE 94.9736% -67 - C2 -2ISI - APEX1_HUMAN -
30 PsiBlast_CBE 94.9536% -65 - C2 -1E9N - APEX1_HUMAN -
27 PsiBlast_CBE 94.8336% -69 - C2 -3U8U - APEX1_HUMAN -
9 PsiBlast_PDB 94.8036% -65 - C2 -1DEW 5.3 APEX1_HUMAN
2 PsiBlast_PDB 94.7936% -68 - C2 -4QH9 - APEX1_HUMAN -
6 PsiBlast_PDB 94.7836% -67 - C2 -1E9N - APEX1_HUMAN -
12 PsiBlast_PDB 94.6436% -70 - C2 -1DE9 7.2 APEX1_HUMAN
36 PsiBlast_CBE 94.5036% -66 - C2 -4IEM Error APEX1_HUMAN
33 PsiBlast_CBE 94.0436% -65 - C2 -1DE8 5.5 APEX1_HUMAN
16 PsiBlast_PDB 92.6832% -60 - C2 -3W2Y 3.6 ?
39 PsiBlast_CBE 92.3932% -59 - C2 -3W2Y 2.8 ?
15 PsiBlast_PDB 91.9332% -61 - C2 -3W2X 3.1 ?
57 PsiBlast_CBE 90.6231% -56 - C2 -3G00 2.9 ?
50 PsiBlast_CBE 90.2931% -55 - C2 -3GA6 3.8 ?
46 PsiBlast_CBE 90.1031% -54 - C2 -3G2C 6.5 ?
41 PsiBlast_CBE 89.9231% -55 - C2 -3G4T 3.8 ?
54 PsiBlast_CBE 89.9131% -54 - C2 -3G2D 5.6 ?
56 PsiBlast_CBE 89.9031% -55 - C2 -3G0R 5.5 ?
45 PsiBlast_CBE 89.8731% -54 - C2 -3G3C 3.2 ?
49 PsiBlast_CBE 89.6431% -49 - C2 -3GA6 4.1 ?
53 PsiBlast_CBE 89.6131% -55 - C2 -3G2D 3.8 ?
55 PsiBlast_CBE 89.5731% -56 - C2 -3G0R 4.6 ?
52 PsiBlast_CBE 89.5431% -58 - C2 -3G38 2.9 ?
40 PsiBlast_CBE 89.3931% -57 - C2 -3G4T 3.6 ?
44 PsiBlast_CBE 89.3731% -56 - C2 -3G3C 3.4 ?
47 PsiBlast_CBE 89.1231% -51 - C2 -3G2C 4.6 ?
42 PsiBlast_CBE 88.8931% -54 - C2 -3G3Y 6.1 ?
58 PsiBlast_CBE 88.6731% -55 - C2 -3G00 3.5 ?