@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1629: (2015-12-09 )
MALLEVKNLSKHFGGLTAVGDVSMKLHKGELIGLIGPNGAGKTTLFNLLTGVYLPSKGTISLDGKILNGRKPAKIASLGLGRTFQNIRLFKNMTVLDNVLVGLSNHHLSHPIASFLRLPKYYHSEKALRKKALELLEIFGLKAYQDALAKNLPYGKQRRLEIVRALATEPKILFLDEPAAGMNPQETAELTQLISQIKSDFDITIMLIEHDMNLVMQVTERIYVLEYGRLIAHGTPEEIKNNKRVIEAYLGGEL

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_5(4QC2)
?
[Raw transfer]



ATP_B_9(4P33)
LPTB_ECOLI
[Raw transfer]



ATP_A_3(4QC2)
?
[Raw transfer]



ADP_A_4(1G6H)
LIVG_METJA
[Raw transfer]



ATP_A_4(4P33)
LPTB_ECOLI
[Raw transfer]



ADP_A_4(1G6H)
LIVG_METJA
[Raw transfer]



ADP_A_8(1G9X)
LIVG_METJA
[Raw transfer]



ADP_B_5(4P32)
LPTB_ECOLI
[Raw transfer]



ADP_A_3(4P32)
LPTB_ECOLI
[Raw transfer]



ADP_B_10(1G9X)
LIVG_METJA
[Raw transfer]



ADP_C_12(1G9X)
LIVG_METJA
[Raw transfer]



ADP_A_3(4P31)
LPTB_ECOLI
[Raw transfer]
3 PsiBlast_PDB 92.8835%-108 - C1 -1G6H 6.4 LIVG_METJA
33 Fugue 92.1733%-113 - C1 -1Z47 - ? -
2 PsiBlast_PDB 89.7235%-102 - C1 -1GAJ - LIVG_METJA -
1 PsiBlast_PDB 89.0536% -99 - C1 -1G9X 6.0 LIVG_METJA
4 PsiBlast_PDB 87.8733%-105 - C1 -4QC2 7.4 ?
23 PsiBlast_CBE 87.7533%-107 - C1 -4QC2 7.3 ?
6 PsiBlast_PDB 87.2433%-109 - C1 -4P33 7.5 LPTB_ECOLI
30 Fugue 87.2335%-109 - C1 -1G6H 6.4 LIVG_METJA
25 PsiBlast_CBE 87.2333%-106 - C1 -4P33 7.4 LPTB_ECOLI
22 PsiBlast_CBE 86.8836%-109 - C1 -1G9X 5.6 LIVG_METJA
21 PsiBlast_CBE 86.3836% -99 - C1 -1G9X 4.5 LIVG_METJA
24 PsiBlast_CBE 85.4433%-110 - C1 -4P32 6.6 LPTB_ECOLI
5 PsiBlast_PDB 85.1133%-107 - C1 -4P32 6.2 LPTB_ECOLI
56 HHSearch 83.9835%-107 - C1 -1G6H - LIVG_METJA -
27 PsiBlast_CBE 83.2533%-107 - C1 -4WBS - ? -
9 PsiBlast_PDB 83.0533%-106 - C1 -4WBS - ? -
34 Fugue 82.5328%-115 - C1 -3TUZ - METN_ECOLI -
31 Fugue 81.7028%-111 - C1 -1OXS - ? -
13 PsiBlast_PDB 80.7428%-111 - C1 -1OXU - ? -
14 PsiBlast_PDB 80.3028%-107 - C1 -1OXV - ? -
8 PsiBlast_PDB 54.5033% -10 - C1 -4P31 6.2 LPTB_ECOLI