@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1717: (2015-12-10 )
MTIKNLTVAGSGVLGSQIAFQAAYKGMSVTIYDINDEALNKGKERIKKLAKVYQSEIETAKEAYSDKAKSIKYNKNLLPSLDHIFLSKVADSLDLIADLPNQITFSKNLDQAVSDADLVIEAVPETVSIKEDFYKQLAKVAPSKTIFATNSSTLVPSQFADITGRPDKFLAMHFANNIWQNNIVEIMGHKGTDDEVVKEALAFSKDIGMVPLHIHKEQPGYILNSILVPFLESALALYYNKVSDSETIDKTWKLGTGAPMGPLEILDIIGIDTAYNIMKNYSDTNSDPNSLHAHLAKMLKEEFIDKGRTGKAAGHGFYDYD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_A_2(4E13)
?
[Raw transfer]



NAD_A_2(4DYD)
?
[Raw transfer]



1PE_A_7(4E13)
?
[Raw transfer]



1PE_A_7(4E12)
?
[Raw transfer]



GOL_A_4(3RQS)
HCDH_HUMAN
[Raw transfer]
1 PsiBlast_PDB 98.3148% -96 - C1 -4DYD 7.5 ?
3 PsiBlast_PDB 98.1848% -96 - C1 -4E13 8.7 ?
2 PsiBlast_PDB 98.0848% -99 - C1 -4E12 2.9 ?
5 PsiBlast_PDB 90.9632% -98 - C1 -3HAD - HCDH_HUMAN -
13 PsiBlast_PDB 90.8832% -95 - C1 -3HDH - HCDH_PIG -
20 PsiBlast_PDB 89.9230% -91 - C1 -2HDH - HCDH_HUMAN -
29 PsiBlast_CBE 89.7732% -90 * C1 *3HDH - HCDH_PIG -
22 PsiBlast_CBE 89.5932% -98 - C1 -3HAD - HCDH_HUMAN -
19 PsiBlast_PDB 89.3031% -95 - C1 -3RQS 2.0 HCDH_HUMAN
10 PsiBlast_PDB 89.1932% -97 - C1 -1F17 - HCDH_HUMAN -
28 PsiBlast_CBE 89.0832% -96 - C1 -1F12 - HCDH_HUMAN -
8 PsiBlast_PDB 88.8632% -94 - C1 -1F12 - HCDH_HUMAN -
25 PsiBlast_CBE 88.7231% -95 - C1 -1LSJ - HCDH_HUMAN -
24 PsiBlast_CBE 88.5631% -94 - C1 -1LSO - HCDH_HUMAN -
23 PsiBlast_CBE 88.5431% -91 - C1 -1M76 - HCDH_HUMAN -
9 PsiBlast_PDB 88.3032% -97 - C1 -1F14 - HCDH_HUMAN -
27 PsiBlast_CBE 88.2132% -95 - C1 -1F17 - HCDH_HUMAN -
30 PsiBlast_CBE 88.0431% -91 - C1 -1M75 - HCDH_HUMAN -
7 PsiBlast_PDB 87.6431% -96 - C1 -1LSO - HCDH_HUMAN -
6 PsiBlast_PDB 87.6431% -88 - C1 -1M76 - HCDH_HUMAN -