@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1730: (2015-12-10 )
MGFHQLSDKINIEILKQKTSLDLEVSQKKLAKEEELKNIIKGEDQRFLVIVGPCSADNPKAVLTYAKRLAKLEAAFKDKMFLVMRVYTAKPRTNGDGYKGLVHHSDKLGVFFQARKMHYDIIRETGLLTADELLYPEMLSVMDDLVSYYAIGARSVEDQGHRFISSGIDAPVGMKNPTSGNLRVMLNAVYAAQNQQELFYQNKQVRTDGNLLSHVILRGYHNADYRSIPNYHYENLLETITHYEETDLQNPFIVVDTNHDNSGKQFLEQIRIVKSVLADRQWHTKIRNYVRGFLIESYLEDGRQDKPDVFGKSITDPCLGWDKTEMLIRDIYNSL

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PEP_A_4(1OFA)
AROG_YEAST
[Raw transfer]




PEP_B_7(1OFA)
AROG_YEAST
[Raw transfer]




PEP_A_4(1OAB)
AROG_YEAST
[Raw transfer]




G3P_B_10(1OF8)
AROG_YEAST
[Raw transfer]




PGA_A_3(1OFO)
AROG_YEAST
[Raw transfer]




G3P_A_5(1OF8)
AROG_YEAST
[Raw transfer]




G3P_A_5(1OF8)
AROG_YEAST
[Raw transfer]




GOL_B_9(1OFA)
AROG_YEAST
[Raw transfer]




E4P_A_8(1RZM)
AROF_THEMA
[Raw transfer]




GOL_A_11(3RZI)
AROG_MYCTU
[Raw transfer]




93 Fugue 97.8235% -74 - C4 -1QR7 - AROG_ECOLI -
37 PsiBlast_CBE 96.2835% -71 - C4 -4HSO - ? -
94 Fugue 95.7034% -79 - C4 -1GG1 - AROG_ECOLI -
104 HHSearch 95.5335% -68 - C4 -1N8F - AROG_ECOLI -
36 PsiBlast_CBE 95.4735% -70 - C4 -4HSO - ? -
5 PsiBlast_PDB 95.1735% -72 - C4 -4HSO - ? -
6 PsiBlast_PDB 94.2735% -68 - C4 -4IXX - ? -
38 PsiBlast_CBE 94.0635% -68 - C4 -4HSO - ? -
34 PsiBlast_CBE 93.9935% -70 - C4 -4IXX - ? -
1 PsiBlast_PDB 93.9035% -69 - C4 -4HSN - ? -
26 PsiBlast_CBE 93.8435% -66 - C4 -4UMB - ? -
35 PsiBlast_CBE 93.7535% -68 - C4 -4IXX - ? -
33 PsiBlast_CBE 93.6235% -68 - C4 -4IXX - ? -
28 PsiBlast_CBE 93.4335% -68 - C4 -4UMA - ? -
31 PsiBlast_CBE 93.3935% -70 - C4 -4HSN - ? -
40 PsiBlast_CBE 93.3537% -83 - C4 -1N8F - AROG_ECOLI -
22 PsiBlast_CBE 93.3135% -67 - C4 -4UMC - ? -
103 HHSearch 93.2933% -71 * C4 *3TQK - ? -
24 PsiBlast_CBE 93.1735% -67 - C4 -4UMB - ? -
11 PsiBlast_PDB 93.1735% -75 - C4 -3TQK - ? -
102 HHSearch 90.6133% -64 - C4 -1OF8 3.2 AROG_YEAST
15 PsiBlast_PDB 89.2131% -52 - C4 -1OFA 5.3 AROG_YEAST
14 PsiBlast_PDB 88.4031% -51 - C4 -1OF8 3.2 AROG_YEAST
13 PsiBlast_PDB 88.1231% -51 - C4 -1OAB 5.0 AROG_YEAST
64 PsiBlast_CBE 87.7031% -51 - C4 -1OF8 3.1 AROG_YEAST
63 PsiBlast_CBE 87.6431% -55 - C4 -1OFA 5.5 AROG_YEAST
17 PsiBlast_PDB 86.1631% -53 - C4 -1OFO 4.1 AROG_YEAST