@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1741: (2015-12-10 )
MDVLRRLYKFAPEKKVYSYASLVLSAIATIFSVVPYFYLWKFLNELLVLKNLESANKYALWIFMFLVLQTLVYFLSLYCSHMFAFRVERNLKIEGLNNLLEASFSFFDTNPSGKTRQIIDDNASETHSILAHMQPDMVNAMVYPVILLVVSFLVSISFGIVMVVSLVLGVFLITKMFGNQNFLQKYMASNEDMSSEIVEYIRGVKVIKIFNIGIEKFRSLHKTIITSSELGYAYAISCRKWKVFYDSFFMGLCMVTIPYGVYLLNINTHLGEIISYTVFFTAFIELLYNAFNKVMFLGQNKAKAKNSIDKLEEIFNKMQVKKLDSGLSDEIQNFDIEFEKVSFKYEGNTPYVLKDLSFKLDSGKSYALIGSSGSGKSTIAKLISGFYDVDSGVIKIGGRDIKEYSRETIASSIAFVFQNAKLFKMSIYDNVRIGNPDATYEEIMQALEKARCNEILDKFELRENTMIGAEGVYLSGGETQRIVIARAILKNSPIIILDEASAAADPENEYELQMAFTQLIKNKTVIMIAHRLSAIKNMDEIIVVENGQIIERGSSKLLLEDKSSKYSYFMNMYIRANDWIMSNEV

Atome Classification :

(41 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ACP_A_4(4AYT)
ABCBA_HUMAN
[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ATP_D_5(3VX4)
?
[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




8 PsiBlast_PDB 87.2628%-105 - C2 -4Q4H - Y288_THEMA -
6 PsiBlast_PDB 86.4328%-107 - C2 -3QF4 - Y288_THEMA -
7 PsiBlast_PDB 85.6828%-106 - C2 -4Q4A - Y288_THEMA -
9 PsiBlast_PDB 84.8028%-104 - C2 -4Q4J - Y288_THEMA -
15 PsiBlast_PDB 79.7929%-101 - C2 -4S0F - ? -
13 PsiBlast_PDB 78.3029%-102 - C2 -4RY2 - ? -
20 PsiBlast_PDB 76.6027%-103 - C2 -4AYT 5.9 ABCBA_HUMAN
67 HHSearch 75.4925% -91 - C2 -3B60 - MSBA_SALTY -
69 HHSearch 75.2724% -98 - C2 -3ZDQ - ABCBA_HUMAN -
70 HHSearch 75.2322%-106 - C2 -3WMG - ? -
4 PsiBlast_PDB 74.2528% -89 - C2 -3B60 - MSBA_SALTY -
88 Fugue 73.7625% -87 - C2 -3B60 - MSBA_SALTY -
10 PsiBlast_PDB 69.6726% -89 - C2 -2HYD - Y1866_STAAM -
11 PsiBlast_PDB 69.5026% -88 - C2 -2ONJ - Y1866_STAAM -
18 PsiBlast_PDB 65.2539% -90 - C2 -3NHA - -
19 PsiBlast_PDB 64.8839% -92 - C2 -3NHB - -
17 PsiBlast_PDB 64.8039% -88 - C2 -3NH9 - -
16 PsiBlast_PDB 64.7639% -87 - C2 -3NH6 - -
23 PsiBlast_CBE 64.3642%-102 - C2 -2GHI - ? -
27 PsiBlast_CBE 64.2339%-106 - C2 -1MT0 - -
41 PsiBlast_CBE 63.2338%-107 - C2 -1XEF 6.8 HLYBP_ECOLX
35 PsiBlast_CBE 62.5638%-101 - C2 -2FGJ 6.8
29 PsiBlast_CBE 62.2939%-106 - C2 -2FGK 7.2
40 PsiBlast_CBE 61.8738%-100 - C2 -1XEF 6.9
42 PsiBlast_CBE 61.8138% -99 - C2 -1XEF 7.0 HLYBP_ECOLX
43 PsiBlast_CBE 61.6038% -97 - C2 -1XEF 6.4 HLYBP_ECOLX
26 PsiBlast_CBE 61.3339%-101 - C2 -2FF7 6.5
31 PsiBlast_CBE 61.2139%-106 - C2 -2FGK 7.1 HLYBP_ECOLX
36 PsiBlast_CBE 60.9238% -97 - C2 -2FGJ 6.8 HLYBP_ECOLX
38 PsiBlast_CBE 60.8538% -99 - C2 -2FGJ 7.0 HLYBP_ECOLX
39 PsiBlast_CBE 60.3538%-101 - C2 -2FFA 6.4
32 PsiBlast_CBE 59.9139%-103 - C2 -2FGK 7.5 HLYBP_ECOLX
25 PsiBlast_CBE 59.8538%-100 - C2 -2PMK 7.1
30 PsiBlast_CBE 59.8039%-100 - C2 -2FGK 6.7 HLYBP_ECOLX
37 PsiBlast_CBE 59.4838% -97 - C2 -2FGJ 7.2 HLYBP_ECOLX
77 HHSearch 59.3238% -96 * C2 *2FF7 6.6
28 PsiBlast_CBE 57.7438% -97 - C2 -3B5J 6.9
46 PsiBlast_CBE 56.2735% -95 - C2 -3VX4 6.8 ?
76 HHSearch 54.7336% -96 - C2 -1MV5 6.5 LMRA_LACLA
45 PsiBlast_CBE 54.5635% -98 - C2 -3VX4 6.4 ?
73 HHSearch 54.3833% -86 - C2 -3VX4 6.8 ?