@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1742: (2015-12-10 )
MIELKGVNFKYKNTKNSCLDNIDLEIKKGEFVLISGASGSGKTSITRVINKLIPYYYEGELEGTVKINNDLVSSYQMFELSEIVGSVFQNPRTQFFNVDTNSEIVFGLENQGVSRDILKKRLKETCETLDINKLQNRNIFHLSGGEKQKIAFASVYAMNPDIYLLDEPSSNLDIPTIEVLKRHLSVLKNSGKTVIISEHRIYYLMDLVDKVIYMKNGQIQKSYSKEDFLNLSEDEIKAMALRCRKKTKLNIEMSNNEKHPYLQVNDFSIYRKDNCIINNMNFSANKGDIVAVIGSNGVGKTTFLRTLCGLHDNYKGDVLLNSKKTDAKKRRQKNYMVMQDVNYQLFAESVFAECKLGIENVSDDLIEEILNEFDLSDYKNNHPNTLSGGQKQRLAIAVGLICKKEIFVLDEPTSGLDYTNMVKTVELLKRYSKDKIIFIATHDTEFANLICNRVLDLEK

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_J_5(3C41)
?
[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




ATP_J_5(4YMU)
?
[Raw transfer]




AGS_B_6(3C4J)
?
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




AGS_A_4(3C4J)
?
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




ADP_A_5(2Q0H)
?
[Raw transfer]




ADP_B_6(2Q0H)
?
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




ADP_B_6(2OLJ)
?
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




AT4_C_7(2OLK)
?
[Raw transfer]




AT4_A_5(2OLK)
?
[Raw transfer]




AGS_B_4(4S0F)
?
[Raw transfer]




ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]




96 Fugue 67.1223% -62 - C2 -4F4C - PGP1_CAEEL -
4 PsiBlast_PDB 66.4225% -71 - C3 -3OZX - ? -
6 PsiBlast_PDB 63.7125% -63 - C3 -3BK7 - ? -
103 HHSearch 61.4822% -72 * C3 *1YQT - ? -
100 HHSearch 61.2521% -68 - C3 -3BK7 - ? -
1 PsiBlast_PDB 61.0124% -58 - C3 -1YQT - ? -
104 HHSearch 59.1322% -74 - C3 -3OZX - ? -
27 PsiBlast_CBE 59.1332%-106 - C2 -4YMU 4.4 ?
48 PsiBlast_CBE 58.8231%-105 - C2 -3TUZ - METN_ECOLI -
5 PsiBlast_PDB 58.4025% -53 - C3 -3J15 - ? -
102 HHSearch 58.3023% -62 - C1 -2IW3 - EF3A_YEAST -
14 PsiBlast_PDB 58.2832%-106 - C2 -4YMW - ? -
10 PsiBlast_PDB 57.9732%-107 - C2 -4YMS - ? -
50 PsiBlast_CBE 57.4931%-106 - C2 -3TUZ - METN_ECOLI -
51 PsiBlast_CBE 57.3831%-108 - C2 -3TUI - METN_ECOLI -
54 PsiBlast_CBE 57.3531%-102 - C2 -3TUI - METN_ECOLI -
12 PsiBlast_PDB 57.2332%-105 - C2 -4YMU 5.2 ?
47 PsiBlast_CBE 57.0531%-106 - C2 -3TUZ - METN_ECOLI -
101 HHSearch 56.6521% -63 - C3 -3J16 - RLI1_YEAST -
122 HHSearch 56.5022% -97 - C2 -1V43 - ? -
26 PsiBlast_CBE 56.0132%-103 - C2 -4YMV 4.5 ?
13 PsiBlast_PDB 55.0132%-103 - C2 -4YMV 4.6 ?
39 PsiBlast_CBE 54.5531%-109 - C2 -2OLK 4.3 ?
29 PsiBlast_CBE 53.7431%-113 - C2 -3C4J 3.2 ?
37 PsiBlast_CBE 53.2531%-111 - C2 -2OLK 4.1 ?
19 PsiBlast_PDB 52.9331%-112 - C2 -2OLJ 4.1 ?
32 PsiBlast_CBE 52.0731%-108 - C2 -2Q0H 4.1 ?
41 PsiBlast_CBE 51.6631%-104 - C2 -3C41 6.0 ?
30 PsiBlast_CBE 51.4531%-104 - C2 -3C4J 5.3 ?
38 PsiBlast_CBE 51.2731%-110 - C2 -2OLK 4.7 ?
20 PsiBlast_PDB 50.8731%-109 - C2 -2OLK 4.2 ?
31 PsiBlast_CBE 49.8731%-108 - C2 -2Q0H 4.6 ?
40 PsiBlast_CBE 49.7631%-106 - C2 -2OLJ 4.1 ?
42 PsiBlast_CBE 47.6831%-102 - C2 -3C41 4.8 ?
44 PsiBlast_CBE 41.2132% -62 - C2 -1L2T 4.1 Y796_METJA
89 PsiBlast_CBE 9.9636% -52 - C2 -4S0F 2.7 ?