@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1751: (2015-12-10 )
MGFEQRLTRCQTAISQLSCDALLITNLTNIFYLTGFSGTNATVLISPKHRIFVTDSRYALIAKNTVREFDIIISREPLAAILKIIRDDALMAIGFETDISYHMYKHMVEVFEDYRLIEAPSVVEKLRMIKDATELAIIRQACRISDQAFLDVLDFIKPDRTTELQVANFLDFRMRELGATGPSFDFIVASGYRSAMPHGVASQKTIQSGEALTLDFGCYYQHYVSDMTRTIHIGHVTDQEREIYDIVLKSNQAIIDNVKSGMKRCDYDYLARQVIENSGYGNHFTHGIGHGMGLDVHEIPYFGKSEGVIASGMVVTDEPGIYLDNKYGVRIEDDLLITETGCEVLTSAPKELIVL

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PG4_A_3(1WLR)
AMPP_ECOLI
[Raw transfer]



MRD_A_8(2BHB)
AMPP_ECOLI
[Raw transfer]



IPA_A_7(1WL6)
AMPP_ECOLI
[Raw transfer]



CHAIN_B_2(1N51)
AMPP_ECOLI
[Raw transfer]
-
XPE_A_6(1WL6)
AMPP_ECOLI
[Raw transfer]



CHAIN_B_2(2BHD)
AMPP_ECOLI
[Raw transfer]
-
CHAIN_B_2(2BHA)
AMPP_ECOLI
[Raw transfer]
-
1 PsiBlast_PDB 90.3642%-116 - C1 -3Q6D - ? -
21 PsiBlast_CBE 90.0742%-116 - C1 -3Q6D - ? -
22 PsiBlast_CBE 89.4542%-114 - C1 -3Q6D - ? -
41 HHSearch 89.0241%-113 - C1 -3Q6D - ? -
23 PsiBlast_CBE 88.8442%-118 - C1 -3Q6D - ? -
24 PsiBlast_CBE 80.1136%-115 - C1 -2ZSG - ? -
2 PsiBlast_PDB 79.9636%-117 - C1 -2ZSG - ? -
42 HHSearch 77.1536%-109 - C1 -2ZSG - ? -
4 PsiBlast_PDB 76.0434%-110 - C1 -1WY2 - PEPQ_PYRHO -
5 PsiBlast_PDB 75.8133%-114 - C1 -1WN1 - ? -
26 PsiBlast_CBE 75.7033%-111 - C1 -1WN1 - ? -
6 PsiBlast_PDB 75.0833%-112 - C1 -2HOW - ? -
3 PsiBlast_PDB 74.4635% -99 - C1 -1PV9 - PEPQ_PYRFU -
25 PsiBlast_CBE 74.2934%-110 - C1 -1WY2 - PEPQ_PYRHO -
43 HHSearch 72.3534% -99 - C1 -1WY2 - PEPQ_PYRHO -
7 PsiBlast_PDB 72.0731% -94 - C1 -4FKC - ? -
32 Fugue 71.8535%-104 - C1 -1PV9 - PEPQ_PYRFU -
31 Fugue 69.2532%-101 - C1 -1WN1 - ? -
27 PsiBlast_CBE 68.6931% -94 - C1 -4RGZ - ? -
44 HHSearch 65.0933% -92 - C1 -1WN1 - ? -
15 PsiBlast_PDB 47.0430% -68 - C1 -1WL6 3.2 AMPP_ECOLI
16 PsiBlast_PDB 47.0130% -68 - C1 -1WLR 2.8 AMPP_ECOLI
20 PsiBlast_PDB 46.5930% -68 - C1 -2BHD 3.4 AMPP_ECOLI
17 PsiBlast_PDB 45.9930% -68 - C1 -2BHA 5.3 AMPP_ECOLI
18 PsiBlast_PDB 45.7430% -66 - C1 -2BHB 3.1 AMPP_ECOLI
14 PsiBlast_PDB 45.5230% -68 - C1 -1N51 7.0 AMPP_ECOLI