@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1783: (2015-12-10 )
MSSYWNNYPELKKNIDETNQLIQERIQVRNKDIEAALSQLTAAGGKQLRPAFFYLFSQLGNKENQDTQQLKKIAASLEILHVATLIHDDVIDDSPLRRGNMTIQSKFGKDIAVYTGDLLFTVFFDLILESMADTPFMRINAKSMRKILMGELDQMHLRYNQQQGIHHYLRAISGKTAELFKLASKEGAYFGGAEKEVVRLAGHIGFNIGMTFQILDDILDYTADKKTFNKPVLEDLTQGVYSLPLLLAIEENPDIFKPILDKKTDMATEDMEKIAYLVVSHRGVDKARHLARKFTEKAISDINKLPQNSAKKQLLQLTNYLLKRKI

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

RIS_A_10(1RQJ)
ISPA_ECOLI
[Raw transfer]



IPE_B_7(3OYR)
?
[Raw transfer]



2DE_B_8(3AQC)
HEXB_MICLU
[Raw transfer]



2DE_D_13(3AQC)
HEXB_MICLU
[Raw transfer]



GOL_A_2(3LK5)
?
[Raw transfer]



IPE_B_4(3OYR)
?
[Raw transfer]



IPR_A_9(1RQJ)
ISPA_ECOLI
[Raw transfer]



CIT_A_3(3PKO)
?
[Raw transfer]



POP_A_3(3OYR)
?
[Raw transfer]
1 PsiBlast_PDB 97.2445% -88 - C1 -3PKO - ? -
2 PsiBlast_PDB 96.7145% -88 - C1 -3N3D - ? -
21 PsiBlast_CBE 96.2145% -93 - C1 -3PKO - ? -
22 PsiBlast_CBE 95.5545% -93 - C1 -3N3D - ? -
46 HHSearch 94.0544% -84 - C1 -3PKO 3.2 ?
3 PsiBlast_PDB 79.2734% -80 - C1 -3AQB - HEXB_MICLU -
25 PsiBlast_CBE 79.0832% -72 - C1 -3OYR 5.4 ?
4 PsiBlast_PDB 78.8734% -81 - C1 -3AQC 4.3 HEXB_MICLU
23 PsiBlast_CBE 78.4034% -86 - C1 -3AQC 4.0 HEXB_MICLU
39 HHSearch 78.3431% -77 - C1 -3OYR 3.4 ?
5 PsiBlast_PDB 78.2832% -82 - C1 -4LOB - ? -
70 Fugue 77.7531% -76 - C1 -3OYR - ? -
24 PsiBlast_CBE 77.7534% -83 - C1 -3AQB - HEXB_MICLU -
65 Fugue 77.0331% -70 - C1 -3AQB - HEXB_MICLU -
6 PsiBlast_PDB 76.2332% -87 - C1 -3OYR - ? -
8 PsiBlast_PDB 74.5628% -73 - C1 -3Q2Q - ? -
9 PsiBlast_PDB 73.1528% -87 - C1 -3APZ - SPS3_ARATH -
11 PsiBlast_PDB 72.3628% -89 - C1 -4JYX - ? -
7 PsiBlast_PDB 70.7028% -62 - C1 -1WY0 - ? -
44 HHSearch 70.5226% -72 - C1 -3APZ - SPS3_ARATH -