@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1804: (2015-12-10 )
MSNINLKPEEVGVYAIGGLGEIGKNTYGIEYQDEIIIVDAGIKFPEDDLLGIDYVIPDYSYIVENIDRIKALVITHGHEDHIGGIPFLLKQANLPIYAGPLALALIKGKLEEHGLLRDATLYEIHANTELTFKNLSVTFFRTTHSIPEPLSIVIHTPQGKVICTGDFKFDFTPVGEPADLHRMAALGEDGVLCLLSDSTNAEVPTFTNSEKIVGQSIMKIIEGIDGRIIFASFASNIFRLQQAAEAAVKTGRKIAVFGRSMEKAIVNGIELGYIKVPKGTFIEPSELKNLHASEVLIMCTGSQGESMAALARIANGTHRQVTLQPGDTVIFSSSPIPGNTTSVNKLINTIQEAGVDVIHGKINNIHTSGHGGQQEQKLMLRLIKPKYFMPVHGEYRMQKVHAGLAVDTGIPKENIFIMENGDVLALTSDSARIAGHFNAQDIYVDGNGIGDIGAAVLRDRHDLSEDGVVLAVATVDFDSKMILAGPDILSRGFIYMRESGDLIRESQHILFNAIRIALKNKDASIQSVNGAIVNALRPFLYEKTEREPIIIPMVLTPDK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

U5P_A_5(3BK2)
RNJ_THET2
[Raw transfer]




C5P_B_9(5A0V)
?
[Raw transfer]




U5P_A_5(3BK2)
RNJ_THET2
[Raw transfer]




NACID_E_3(5A0V)
?
[Raw transfer]

-

NACID_F_4(5A0T)
?
[Raw transfer]

-

NACID_E_3(5A0T)
?
[Raw transfer]

-

NACID_F_4(5A0V)
?
[Raw transfer]

-

CHAIN_B_2(3T3O)
RNJ_THET2
[Raw transfer]

-

CHAIN_B_2(3T3N)
RNJ_THET2
[Raw transfer]

-

1 PsiBlast_PDB 95.7561%-122 - C1 -3ZQ4 - RNJ1_BACSU -
21 PsiBlast_CBE 95.3561%-123 - C1 -3ZQ4 - RNJ1_BACSU -
23 PsiBlast_CBE 95.1361%-124 - C1 -3ZQ4 - RNJ1_BACSU -
22 PsiBlast_CBE 95.0461%-123 - C1 -3ZQ4 - RNJ1_BACSU -
2 PsiBlast_PDB 84.6540%-108 - C1 -3T3N 10.8 RNJ_THET2
3 PsiBlast_PDB 84.2040%-109 - C1 -3T3O 8.1 RNJ_THET2
5 PsiBlast_PDB 84.1540%-104 - C1 -3BK2 4.8 RNJ_THET2
38 HHSearch 84.1440%-104 - C1 -3BK2 4.8 RNJ_THET2
4 PsiBlast_PDB 83.8140%-102 - C1 -3BK1 - RNJ_THET2 -
24 PsiBlast_CBE 77.0542%-104 - C1 -5A0V 9.6 ?
25 PsiBlast_CBE 77.0342%-105 - C1 -5A0T 13.4 ?
7 PsiBlast_PDB 76.8742%-103 - C1 -5A0V 12.3 ?
6 PsiBlast_PDB 76.7642%-104 - C1 -5A0T 13.0 ?
40 HHSearch 53.2617% -86 - C1 -2AZ4 - ? -
60 Fugue 52.5017% -81 - C1 -2AZ4 - ? -
41 HHSearch 51.8521% -81 - C1 -3AF5 - ? -
61 Fugue 50.9720% -92 - C1 -5AHR - -
39 HHSearch 49.2218% -90 * C1 *3IEK - RNSE_THET8 -
42 HHSearch 48.9517% -82 - C1 -2I7T - CPSF3_HUMAN -
44 HHSearch 48.2719% -79 - C1 -2YCB - ? -