@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1809: (2015-12-10 )
MAKLTVKDVDLKGKKVLVRVDFNVPLKDGVITNDNRITAALPTIKYIIEQGGRAILFSHLGRVKEEADKEGKSLAPVAADLAAKLGQDVVFPGVTRGAKLEEAINALEDGQVLLVENTRFEDVDGKKESKNDEELGKYWASLGDGIFVNDAFGTAHRAHASNVGISANVEKAVAGFLLENEIAYIQEAVETPERPFVAILGGSKVSDKIGVIENLLEKADKVLIGGGMTYTFYKAQGIEIGNSLVEEDKLDVAKDLLEKSNGKLILPVDSKEANAFAGYTEVRDTEGEAVSEGFLGLDIGPKSIAKFDEALTGAKTVVWNGPMGVFENPDFQAGTIGVMDAIVKQLGVKSIIGGGDSAAAAINLGRADKFSWISTGGGASMELLEGKVLPGLAALTEK

Atome Classification :

(51 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_3(1VPE)
PGKT_THEMA
[Raw transfer]




ADP_A_5(2WZC)
PGK1_HUMAN
[Raw transfer]




ANP_A_3(1VPE)
PGKT_THEMA
[Raw transfer]




ADP_A_4(2WZB)
PGK1_HUMAN
[Raw transfer]




ADP_A_4(4AXX)
PGK1_HUMAN
[Raw transfer]




ATP_A_3(1VJD)
PGK1_PIG
[Raw transfer]




ADP_A_4(2WZB)
PGK1_HUMAN
[Raw transfer]




ADP_A_5(2WZD)
PGK1_HUMAN
[Raw transfer]




ADP_A_3(2X15)
PGK1_HUMAN
[Raw transfer]




ACP_A_4(2X14)
PGK1_HUMAN
[Raw transfer]




ADP_A_3(2XE7)
PGK1_HUMAN
[Raw transfer]




ADP_A_4(2X13)
PGK1_HUMAN
[Raw transfer]




ADP_A_6(3ZOZ)
PGK1_HUMAN
[Raw transfer]




ATP_A_3(2PAA)
PGK2_MOUSE
[Raw transfer]




ADP_A_3(1PHP)
PGK_GEOSE
[Raw transfer]




ADP_A_3(1PHP)
PGK_GEOSE
[Raw transfer]




MAP_A_2(1QPG)
PGK_YEAST
[Raw transfer]




MAP_A_2(1QPG)
PGK_YEAST
[Raw transfer]




ADP_C_9(4NG4)
PGK_COXBU
[Raw transfer]




LA8_A_5(2Y3I)
PGK1_HUMAN
[Raw transfer]




ADP_B_7(4NG4)
PGK_COXBU
[Raw transfer]




LA8_D_8(2Y3I)
PGK1_HUMAN
[Raw transfer]




ATP_A_3(1VJC)
PGK1_PIG
[Raw transfer]




ADP_A_5(4NG4)
PGK_COXBU
[Raw transfer]




LA8_A_4(2YBE)
PGK1_HUMAN
[Raw transfer]




ACP_A_4(1KF0)
PGK1_PIG
[Raw transfer]




ADP_A_2(2ZGV)
PGK1_HUMAN
[Raw transfer]




ADP_A_2(4FEY)
PGK_FRATT
[Raw transfer]




ADP_B_6(3C3A)
PGK1_HUMAN
[Raw transfer]




AMP_A_2(1HDI)
PGK1_PIG
[Raw transfer]




CDP_A_5(3C3C)
PGK1_HUMAN
[Raw transfer]




ACP_A_3(2XE8)
PGK1_HUMAN
[Raw transfer]




FMT_A_5(3Q3V)
PGK_CAMJE
[Raw transfer]




CDF_B_5(3C3B)
PGK1_HUMAN
[Raw transfer]




3PG_A_4(1VPE)
PGKT_THEMA
[Raw transfer]




3PG_A_3(3C39)
PGK1_HUMAN
[Raw transfer]




3PG_B_6(3C3C)
PGK1_HUMAN
[Raw transfer]




3PG_A_2(2P9T)
PGK2_MOUSE
[Raw transfer]




3PG_A_2(2XE6)
PGK1_HUMAN
[Raw transfer]




3PG_B_4(3C39)
PGK1_HUMAN
[Raw transfer]




3PG_A_5(2CUN)
PGK_PYRHO
[Raw transfer]




3PG_A_5(2CUN)
PGK_PYRHO
[Raw transfer]




3PG_A_4(3C3A)
PGK1_HUMAN
[Raw transfer]




TZN_A_2(4O33)
PGK1_HUMAN
[Raw transfer]




3PG_B_6(2CUN)
PGK_PYRHO
[Raw transfer]




TZN_A_2(4O3F)
PGK1_MOUSE
[Raw transfer]




3PG_B_4(2PAA)
PGK2_MOUSE
[Raw transfer]




ATP_A_3(3PGK)
PGK_YEAST
[Raw transfer]




3PG_A_3(1QPG)
PGK_YEAST
[Raw transfer]




1 PsiBlast_PDB 97.2263% -74 - C8 -4DG5 - PGK_STAAR -
63 HHSearch 94.5057% -80 - C8 -1VPE 8.5 PGKT_THEMA
2 PsiBlast_PDB 94.2656% -83 - C8 -1VPE 8.5 PGKT_THEMA
7 PsiBlast_PDB 93.5847% -87 - C8 -1QPG 8.1 PGK_YEAST
8 PsiBlast_PDB 93.0646% -80 - C8 -2XE6 5.6 PGK1_HUMAN
36 PsiBlast_CBE 92.4846% -79 - C8 -4O33 5.1 PGK1_HUMAN
58 HHSearch 92.3751% -76 - C8 -1PHP 7.7 PGK_GEOSE
44 PsiBlast_CBE 92.3144% -77 - C8 -3OZ7 - PGK_PLAF7 -
43 PsiBlast_CBE 92.2244% -80 - C8 -3OZ7 - PGK_PLAF7 -
3 PsiBlast_PDB 92.2249% -75 - C8 -1PHP 7.7 PGK_GEOSE
9 PsiBlast_PDB 92.1346% -75 - C8 -2XE7 6.3 PGK1_HUMAN
60 HHSearch 92.0546% -77 * C8 *3Q3V 3.2 PGK_CAMJE
10 PsiBlast_PDB 92.0146% -78 - C8 -2XE8 5.2 PGK1_HUMAN
46 PsiBlast_CBE 91.9945% -79 - C8 -1HDI 5.6 PGK1_PIG
41 PsiBlast_CBE 91.9045% -81 - C8 -2P9T 4.9 PGK2_MOUSE
40 PsiBlast_CBE 91.8045% -82 - C8 -2PAA 5.9 PGK2_MOUSE
64 HHSearch 91.7749% -78 - C8 -1QPG 8.1 PGK_YEAST
20 PsiBlast_PDB 91.7046% -84 - C8 -2ZGV 5.4 PGK1_HUMAN
45 PsiBlast_CBE 91.5746% -80 - C8 -4O3F 6.5 PGK1_MOUSE
61 HHSearch 91.4050% -76 - C8 -1V6S - PGK_THET8 -
26 PsiBlast_CBE 91.3746% -73 - C8 -2Y3I 7.0 PGK1_HUMAN
28 PsiBlast_CBE 91.3546% -80 - C8 -3C3C 4.4 PGK1_HUMAN
19 PsiBlast_PDB 91.2346% -80 - C8 -1VJD 6.0 PGK1_PIG
57 HHSearch 91.0347% -73 - C8 -2WZB 8.3 PGK1_HUMAN
35 PsiBlast_CBE 90.9445% -79 - C8 -1KF0 5.8 PGK1_PIG
18 PsiBlast_PDB 90.9346% -76 - C8 -1VJC 6.0 PGK1_PIG
12 PsiBlast_PDB 90.9246% -78 - C8 -3ZOZ 8.0 PGK1_HUMAN
13 PsiBlast_PDB 90.7946% -73 - C8 -2Y3I 6.5 PGK1_HUMAN
11 PsiBlast_PDB 90.7746% -78 - C8 -2YBE 7.7 PGK1_HUMAN
15 PsiBlast_PDB 90.7446% -79 - C8 -2WZC 8.1 PGK1_HUMAN
14 PsiBlast_PDB 90.6046% -79 - C8 -2WZB 8.3 PGK1_HUMAN
33 PsiBlast_CBE 90.5946% -84 - C8 -3C39 5.6 PGK1_HUMAN
25 PsiBlast_CBE 90.5546% -78 - C8 -4AXX 7.9 PGK1_HUMAN
27 PsiBlast_CBE 90.5046% -81 - C8 -3C3C 4.7 PGK1_HUMAN
34 PsiBlast_CBE 90.4846% -85 - C8 -3C39 5.3 PGK1_HUMAN
16 PsiBlast_PDB 90.4046% -78 - C8 -2X13 7.3 PGK1_HUMAN
29 PsiBlast_CBE 90.3146% -83 - C8 -3C3B 4.2 PGK1_HUMAN
32 PsiBlast_CBE 90.2846% -80 - C8 -3C3A 3.8 PGK1_HUMAN
37 PsiBlast_CBE 90.1646% -77 - C8 -2X14 8.5 PGK1_HUMAN
17 PsiBlast_PDB 90.0946% -81 - C8 -2X15 8.0 PGK1_HUMAN
31 PsiBlast_CBE 89.8146% -86 - C8 -3C3A 5.5 PGK1_HUMAN
39 PsiBlast_CBE 89.1945% -82 - C8 -2PAA 3.7 PGK2_MOUSE
38 PsiBlast_CBE 88.8646% -77 - C8 -2WZD 7.1 PGK1_HUMAN
48 PsiBlast_CBE 87.0643% -81 - C8 -4NG4 6.6 PGK_COXBU
47 PsiBlast_CBE 86.7443% -81 - C8 -4NG4 6.6 PGK_COXBU
50 PsiBlast_CBE 86.6644% -74 - C8 -4FEY 5.8 PGK_FRATT
49 PsiBlast_CBE 85.9543% -76 - C8 -4NG4 6.1 PGK_COXBU
54 PsiBlast_CBE 83.6835% -71 - C8 -2CUN 2.5 PGK_PYRHO
53 PsiBlast_CBE 83.0935% -67 - C8 -2CUN 2.8 PGK_PYRHO
65 HHSearch 80.2335% -68 - C8 -2CUN 2.4 PGK_PYRHO
42 PsiBlast_CBE 67.6847% 17 - C8 -3PGK 2.4 PGK_YEAST