@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1812: (2015-12-10 )
MAREFSLEKTRNIGIMAHVDAGKTTTTERILYYTGKIHKIGETHEGASQMDWMEQEQERGITITSAATTAQWDGHRVNIIDTPGHVDFTIEVQRSLRVLDGAVTVLDAQSGVEPQTETVWRQATEYGVPRIVFANKMDKIGADFLYSVQSLHDRLQANAHPIQLPIGSEDDFRGIIDLIKMKAEIYTNDLGTDILEEDIPAEYVDQANEYREKLVEAVADTDEDLMMKYLEGEEITNEELMAAIRRATINVEFYPVLCGSAFKNKGVQLMLDAVIDYLPSPLDIPAIKGINPDTDEEETRPASDEEPFAALAFKIMTDPFVGRLTFFRVYSGVLNSGSYVLNTSKGKRERIGRILQMHANSRQEIETVYAGDIAAAVGLKDTTTGDSLTDEKSKVILESIEVPEPVIQLMVEPKSKADQDKMGIALQKLAEEDPTFRVETNVETGETVISGMGELHLDVLVDRMKREFKVEANVGAPQVSYRETFRASTQARGFFKRQSGGKGQFGDVWIEFTPNEEGKGFEFENAIVGGVVPREFIPAVEKGLVESMANGVLAGYPMVDVKAKLYDGSYHDVDSSETAFKIAASLALKEAAKSAQPAILEPMMLVTITAPEDNLGDVMGHVTARRGRVDGMEARGNTQVVRAFVPLAEMFGYATVLRSATQGRGTFMMVFDHYEDVPKSVQEEIIKKNSGE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_A_2(2BM1)
EFG_THETH
[Raw transfer]




GDP_A_3(4M1K)
?
[Raw transfer]




GDP_C_3(2EFG)
EFG_THET8
[Raw transfer]




GDP_A_2(2BM0)
?
[Raw transfer]




GDP_A_3(4M1K)
?
[Raw transfer]




GCP_A_2(2J7K)
EFG_THETH
[Raw transfer]




GDP_A_3(1FNM)
EFG_THETH
[Raw transfer]




GDP_A_3(4MYU)
EFG_THETH
[Raw transfer]




GDP_A_3(4MYT)
EFG_THETH
[Raw transfer]




GCP_A_2(3J25)
TET1_ENTFL
[Raw transfer]




21 PsiBlast_CBE 89.8476% -14 - C- -2XEX - EFG_STAAU -
1 PsiBlast_PDB 88.8776% -13 - C- -2XEX - EFG_STAAU -
105 HHSearch 88.7376% -12 - C- -2XEX - EFG_STAAU -
3 PsiBlast_PDB 87.7865% -80 - C2 -2J7K 7.2 EFG_THETH
12 PsiBlast_PDB 87.6665% -81 - C2 -2BM0 6.5 ?
10 PsiBlast_PDB 87.4465% -79 - C2 -1FNM 7.4 EFG_THETH
131 Fugue 87.2365% -82 - C2 -4M1K 6.3 ?
7 PsiBlast_PDB 86.8265% -83 - C2 -4M1K 6.3 ?
9 PsiBlast_PDB 86.7765% -80 - C2 -4MYU 6.3 EFG_THETH
2 PsiBlast_PDB 86.6765% -78 - C2 -2OM7 - ? -
5 PsiBlast_PDB 85.4265% -76 - C2 -2EFG 7.2 EFG_THET8
8 PsiBlast_PDB 85.2965% -81 - C2 -2BM1 7.4 EFG_THETH
4 PsiBlast_PDB 84.1265% -74 - C2 -4MYT 5.4 EFG_THETH
13 PsiBlast_PDB 81.9565% -65 - C2 -3IZP - ? -
133 Fugue 80.2763% -75 - C2 -1ELO - ? -
15 PsiBlast_PDB 79.3760% -66 - C2 -3J0E - EFG_ECOLI -
16 PsiBlast_PDB 74.6235% -65 - C2 -1WDT - ? -
17 PsiBlast_PDB 73.7035% -67 - C2 -2DY1 - ? -
107 HHSearch 72.9635% -66 * C2 *2DY1 - ? -
111 HHSearch 58.1527% -68 - C2 -3CB4 - LEPA_ECOLI -