@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1838: (2015-12-11 )
MENLLQHKLPVAPFVESTTNWITKTFSGLFDFIQTIGNALMDWMTKTLLFINPLLFIVLITVAVFFLAKKKWQLPTFTFIGLLFIYNQGLWEQLINTFNLVLVASLISIIIGVPLGIWMAKSDKVKQVVNPILDFMQTMPAFVYLIPAVAFFGIGMVPGVFASVVFALPPTVRFTNLAIREIPLELIEASDSFGSTAKQKLFKVELPLAKNTIMAGINQTMMLALSMVVTGSMIGAPGLGREVLSALQHADIGTGFVSGLSLVILAIVLDRVSQFFNSKPGEKQAKTSKVKKWVGLGALVLFILAALGRIVVNMTSGNEAKGQKVKIAYVQWDSEVASTNVIAEVLKSKGYDVELTPLDNAVMWQTVANGNADFTTSAWLPKTHGQYFNKYKNSLDDLGPHVENVKIGLVVPKYMNVNSIEELSNQADKQITGIEPGAGIMKSAKQSLKDYPNLSSWKLLSASTGAMTTTLGKAIKNKDQVVITGWSPHWMFAKYDLKYLKDPKKSFGGEEHINTIARKNLKKDMPKVYKIIDKFKWTKEDMESIMLDMDKGMEPAKAAQKWIKNHKKEVSEWTK

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BET_A_2(3L6H)
?
[Raw transfer]



BET_B_2(2B4L)
OPUAC_BACSU
[Raw transfer]



BET_B_2(2B4L)
OPUAC_BACSU
[Raw transfer]



313_D_5(3CHG)
OPUAC_BACSU
[Raw transfer]



PBE_D_4(2B4M)
OPUAC_BACSU
[Raw transfer]



PBE_C_3(2B4M)
OPUAC_BACSU
[Raw transfer]



313_A_8(3CHG)
OPUAC_BACSU
[Raw transfer]



313_C_7(3CHG)
OPUAC_BACSU
[Raw transfer]



313_B_6(3CHG)
OPUAC_BACSU
[Raw transfer]



UNL_D_11(3TMG)
?
[Raw transfer]
2 PsiBlast_PDB 95.4758% -68 - C3 -3L6H 4.0 ?
1 PsiBlast_PDB 94.9758% -69 - C3 -3L6G - ? -
26 PsiBlast_CBE 87.4634% -60 - C3 -3TMG - ? -
6 PsiBlast_PDB 86.7634% -61 - C3 -3TMG - ? -
25 PsiBlast_CBE 86.5334% -64 - C3 -3TMG 2.7 ?
27 PsiBlast_CBE 86.2034% -58 - C3 -3TMG - ? -
28 HHSearch 84.2331% -54 - C3 -3TMG - ? -
48 Fugue 72.0521% -38 - C3 -1R9L - PROX_ECOLI -
50 Fugue 72.0145% -39 - C3 -2B4L - OPUAC_BACSU -
29 HHSearch 70.8220% -32 - C3 -1R9L - PROX_ECOLI -
32 HHSearch 69.8922% -47 - C3 -2RIN - ? -
7 PsiBlast_PDB 69.1024% -47 - C3 -2REG - ? -
10 PsiBlast_PDB 66.8424% -43 - C3 -2RIN - ? -
51 Fugue 66.2217% -35 - C3 -4XZ6 - ? -
9 PsiBlast_PDB 65.9724% -40 - C3 -2RF1 - ? -
4 PsiBlast_PDB 65.2047% -50 - C3 -2B4M 2.8 OPUAC_BACSU
24 PsiBlast_CBE 64.8347% -50 - C3 -2B4M 2.5 OPUAC_BACSU
3 PsiBlast_PDB 64.4147% -42 - C3 -2B4L 2.1 OPUAC_BACSU
17 PsiBlast_PDB 64.0917% -30 - C3 -4XZ6 - ? -
22 PsiBlast_CBE 63.9047% -50 - C3 -3CHG 3.1 OPUAC_BACSU
21 PsiBlast_CBE 63.1447% -48 - C3 -3CHG 2.1 OPUAC_BACSU
5 PsiBlast_PDB 63.0447% -45 - C3 -3CHG 3.1 OPUAC_BACSU
40 HHSearch 62.7847% -40 - C3 -2B4L 2.1 OPUAC_BACSU
23 PsiBlast_CBE 61.9447% -43 - C3 -3CHG 2.3 OPUAC_BACSU