@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1875: (2015-12-11 )
MVLDKEIKAQLAQYLDLLESDIVLQADLGDNDNSQKVKDFLDEIVAMSDRISLESTHLKRQPSFGIAKKGHESRVIFSGLPMGHEFTSFILALLQVSGRAPKVDEDIIKRIKGIEKTINLETYVSLTCHNCPDVVQAFNIMAVLNPNITHTMIEGGMYQDEVKSKGIMSVPTVYKDQEEFTSGRATIEQLLEQLDGPLDAEAFADKGVYDVLVIGGGPAGNSAAIYAARKGLKTGILAETFGGQVIETVGIENMIGTLYTEGPKLMAQIEEHTKSYDIDIIKSQLATGIEKKELVEVTLANGAILQAKTAILALGAKWRNINVPGEEEFRNKGVTYCPHCDGPLFEGKDVAVIGGGNSGMEAALDLAGVTKHVTVLEFLPELKADQVLQERAAKTDNLTILKNVATKDIVGEDHVTGLNYTDRDTNEEKHIDLEGVFVQIGLVPSTSWLKDSGIELNERQEIVVDKFGSTNIPGIFAAGDCTDAAYKQIIISMGSGATAAIGAFDYLIRQ

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_5(1HYU)
AHPF_SALTY
[Raw transfer]




FAD_G_7(1FL2)
AHPF_ECOLI
[Raw transfer]




FAD_A_2(4YKF)
?
[Raw transfer]




FAD_G_7(1FL2)
AHPF_ECOLI
[Raw transfer]




FAD_A_5(1HYU)
AHPF_SALTY
[Raw transfer]




FAD_A_5(1HYU)
AHPF_SALTY
[Raw transfer]




FAD_A_2(4YKG)
?
[Raw transfer]




3 PsiBlast_PDB 93.9348%-101 - C2 -4YKG 12.0 ?
102 Fugue 93.7749% -91 - C2 -1HYU 12.0 AHPF_SALTY
112 HHSearch 93.7149% -93 - C2 -1HYU 12.0 AHPF_SALTY
1 PsiBlast_PDB 93.7148% -95 - C2 -1HYU 12.0 AHPF_SALTY
2 PsiBlast_PDB 93.6548%-101 - C2 -4YKF 11.6 ?
115 HHSearch 70.8855% -88 - C2 -1FL2 10.3 AHPF_ECOLI
4 PsiBlast_PDB 70.4754% -88 - C2 -1FL2 10.3 AHPF_ECOLI
8 PsiBlast_PDB 64.7034% -83 - C2 -3F8D - ? -
6 PsiBlast_PDB 64.4035% -84 - C2 -3F8R - ? -
113 HHSearch 64.2433% -85 - C2 -3F8D - ? -
29 PsiBlast_CBE 63.9934% -84 - C2 -3F8D - ? -
5 PsiBlast_PDB 63.5435% -83 - C2 -3F8P - ? -
22 PsiBlast_CBE 63.5135% -84 - C2 -3F8R - ? -
120 HHSearch 63.3938% -79 - C2 -3CTY - ? -
30 PsiBlast_CBE 63.2834% -80 - C2 -3F8D - ? -
28 PsiBlast_CBE 63.1834% -80 - C2 -3F8D - ? -
25 PsiBlast_CBE 63.1335% -82 - C2 -3F8P - ? -
13 PsiBlast_PDB 62.9937% -76 - C2 -4GCM - TRXB_STAAW -
24 PsiBlast_CBE 62.7935% -80 - C2 -3F8P - ? -
21 PsiBlast_CBE 62.7935% -81 - C2 -3F8R - ? -