@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1879: (2015-12-11 )
MIKYQDDFYQAVNGEWAKTAVIPDDKPRTGGFSDLADDIEALMLSTTDKWLADENKPSDTILNHFIAFHKMTADYQKREEVGVSPVLPLIEEYKGLQSFSEFASKVAEYELEGKPNEFPFGVAPDFMNAQLNVLWAEAPGIILPDTTYYSEDNEKGKELLAFWRKSQEDLLPLFGLSEQEIKDILDKVLALDAKLAQYVLSREESSEYVKLYHPYNWEDFTKLAPELPLDAIFQKILGQKPDKVIVPEERFWTEFASDYYSESNWELLKADLILSAANAYNAYLTDDIRIKSGVYSRALSGTPQAMDKKKAAYYLASGPYNQALGLWYAGEKFSPEAKADVEHKIATMIDVYKSRLEKADWLAQSTREKAIMKLNVITPHIGYPEKLPETYTKKIIDPKLSLVENATNLDKISIAYGWSKWNKPVDRSEWHMPAHMVNAYYDPQQNQIVFPAAILQEPFYALEQSSSANYGGIGAVIAHEISHAFDTNGASFDEHGSLNNWWTDEDFEAFKKLTDKVVEQFDGLESYGAKVNGKLTVSENVADLGGVACALEAAQRESDFSARDFFINFATIWRMKARDEYMQMLASVDVHAPAQWRTNITVTNFEEFHKEFDVKDGDNMWRPVEKRVIIW

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

I20_A_6(2QPJ)
NEP_HUMAN
[Raw transfer]



RDF_A_4(3DWB)
ECE1_HUMAN
[Raw transfer]



RDF_A_6(1DMT)
NEP_HUMAN
[Raw transfer]



BIR_A_6(1R1H)
NEP_HUMAN
[Raw transfer]



OIR_A_6(1R1J)
NEP_HUMAN
[Raw transfer]



TI1_A_6(1R1I)
NEP_HUMAN
[Raw transfer]



HA0_A_3(2YB9)
NEP_HUMAN
[Raw transfer]



GOL_A_6(4CTH)
NEP_HUMAN
[Raw transfer]



GOL_A_7(1DMT)
NEP_HUMAN
[Raw transfer]



CIT_A_3(4IUW)
?
[Raw transfer]



STS_A_7(1Y8J)
NEP_HUMAN
[Raw transfer]



CIT_A_3(4IUW)
?
[Raw transfer]
28 Fugue 99.7533% -69 - C6 -4IUW 3.0 ?
1 PsiBlast_PDB 97.4333% -73 - C6 -4IUW 3.0 ?
2 PsiBlast_PDB 90.9029% -53 - C6 -3ZUK - ? -
19 HHSearch 90.7925% -70 - C6 -3DWB - ECE1_HUMAN -
18 HHSearch 90.0327% -64 - C6 -1R1H - NEP_HUMAN -
3 PsiBlast_PDB 89.4126% -54 - C6 -3DWB 5.5 ECE1_HUMAN
27 Fugue 89.3227% -59 * C6 *1DMT - NEP_HUMAN -
4 PsiBlast_PDB 88.0527% -56 - C6 -1DMT 5.7 NEP_HUMAN
7 PsiBlast_PDB 87.8227% -56 - C6 -1R1J 6.0 NEP_HUMAN
10 PsiBlast_PDB 87.2727% -58 - C6 -2YB9 4.4 NEP_HUMAN
5 PsiBlast_PDB 87.2627% -57 - C6 -1R1H 6.9 NEP_HUMAN
8 PsiBlast_PDB 87.0427% -56 - C6 -1Y8J 5.2 NEP_HUMAN
11 PsiBlast_PDB 86.7527% -59 - C6 -4CTH 2.3 NEP_HUMAN
6 PsiBlast_PDB 86.6427% -54 - C6 -1R1I 4.4 NEP_HUMAN
9 PsiBlast_PDB 85.9427% -56 - C6 -2QPJ 5.0 NEP_HUMAN
36 Fugue 55.1919% -42 - C4 -4F1N - ? -
31 Fugue 51.5314% -31 - C3 -4XVK - DPOLN_HUMAN -
34 Fugue 50.3615% -36 - C2 -4XGC - ? -
33 Fugue 49.0711% -17 * C4 *2UXW - ACADV_HUMAN -
35 Fugue 48.6114% -26 - C5 -4U1C - EIF3C_YEAST -