@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1884: (2015-12-11 )
MSKKMTINDIAQLSKTSKTTVSFFLNQKFEKMSDETRQRIQEVIDETGYRPSTIARSLNSKKTKLLGVLIGDITNTFSNQIVKGIEHITKQKGYQIIVGNSNYDAKSEEDYIENMLNLGVDGFIIQPTSNFRKYSRILKEKKKPMVFFDSQLYEHKTSWVKANNYDAVYDMTQECLNRGYKKFIMITADTSLLSTRIERASGFMDALKDNGFGYDTLVIEDDDHSKSDIEDFLKAVVPDKEETLVFAPNCWALPMVFTAMKNLNFDMPRVGLVGFDNIEWTDFSSPKVSTIVQPAYEEGEQVAQILINRIEGDDSVDNQQIVDCQMFWKESTF

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_R_2(1RZR)
CCPA_BACME
[Raw transfer]
-
NACID_B_4(1RZR)
CCPA_BACME
[Raw transfer]
-
3 PsiBlast_PDB 93.3327% -73 - C3 -1RZR 3.1 CCPA_BACME
2 PsiBlast_PDB 93.3327% -76 - C3 -1ZVV - CCPA_BACSU -
11 PsiBlast_PDB 92.2826% -84 - C3 -1JH9 - PURR_ECOLI -
10 PsiBlast_PDB 91.5126% -85 - C3 -1JFT - PURR_ECOLI -
57 Fugue 90.7725% -85 - C3 -1RZR 5.0 CCPA_BACME
5 PsiBlast_PDB 90.7327% -79 - C3 -3OQN - CCPA_BACSU -
17 PsiBlast_PDB 90.6426% -83 - C3 -1PNR - PURR_ECOLI -
4 PsiBlast_PDB 90.2927% -71 - C3 -3OQM - CCPA_BACSU -
15 PsiBlast_PDB 90.2626% -85 - C3 -2PUC - PURR_ECOLI -
13 PsiBlast_PDB 90.2226% -82 - C3 -2PUA - PURR_ECOLI -
19 PsiBlast_PDB 90.1426% -83 - C3 -1WET - PURR_ECOLI -
12 PsiBlast_PDB 90.1426% -87 - C3 -1JFS - PURR_ECOLI -
16 PsiBlast_PDB 90.0026% -86 - C3 -2PUD - PURR_ECOLI -
18 PsiBlast_PDB 89.9826% -85 - C3 -1BDI - PURR_ECOLI -
20 PsiBlast_PDB 89.9226% -84 - C3 -1QP0 - PURR_ECOLI -
14 PsiBlast_PDB 89.9026% -86 - C3 -2PUB - PURR_ECOLI -
1 PsiBlast_PDB 89.8127% -68 - C3 -2HSG - CCPA_BACME -
42 HHSearch 89.5826% -70 - C3 -1QPZ - PURR_ECOLI -
6 PsiBlast_PDB 89.4727% -76 - C3 -3OQO - CCPA_BACSU -
35 HHSearch 85.6326% -65 - C3 -2HSG - CCPA_BACME -