@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1889: (2015-12-11 )
MMKIKPVKVESIENPKRFLNSRLLTKIEVEEAIEKALKQLYINIDYFGEEYPTPATFNNIYKVMDNTEWTNGFWTGCLWLAYEYNQDKKLKNIAHKNVLSFLNRINNRIALDHHDLGFLYTPSCTAEYRINGDVKALEATIKAADKLMERYQEKGGFIQAWGELGYKEHYRLIIDCLLNIQLLFFAYEQTGDEKYRQVAVNHFYASANNVVRDDSSAFHTFYFDPETGEPLKGVTRQGYSDESSWARGQAWGIYGIPLSYRKMKDYQQIILFKGMTNYFLNRLPEDKVSYWDLIFTDGSGQPRDTSATATAVCGIHEMLKYLPEVDPDKETYKYAMHTMLRSLIEQYSNNELIAGRPLLLHGVYSWHSGKGVDEGNIWGDYYYLEALIRFYKDWELYW

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UCD_A_3(2AHG)
UGL_BACGL
[Raw transfer]




UCD_B_4(2AHG)
UGL_BACGL
[Raw transfer]




SUGAR_A_3(2FV1)
UGL_BACGL
[Raw transfer]

-

SUGAR_B_4(2FV1)
UGL_BACGL
[Raw transfer]

-

SUGAR_A_3(2FV0)
UGL_BACGL
[Raw transfer]

-

EDO_A_12(3WUX)
UCDH_STRA3
[Raw transfer]




MPD_A_3(2FUZ)
UGL_BACGL
[Raw transfer]




MPD_A_4(2FUZ)
UGL_BACGL
[Raw transfer]




3 PsiBlast_PDB 96.6099% -98 - C1 -3ANK - UCDH_STRA3 -
19 PsiBlast_CBE 96.1399% -98 - C1 -3VXD - UCDH_STRA3 -
2 PsiBlast_PDB 96.0899%-100 - C1 -3ANI - UCDH_STRA3 -
17 PsiBlast_CBE 95.6599%-102 - C1 -3VXD - UCDH_STRA3 -
4 PsiBlast_PDB 95.1799%-100 - C1 -3VXD - UCDH_STRA3 -
22 HHSearch 95.04100% -92 - C1 -2ZZR - ? -
5 PsiBlast_PDB 95.04100% -92 - C1 -2ZZR - ? -
1 PsiBlast_PDB 94.47100% -96 - C1 -3ANJ - UCDH_STRA3 -
18 PsiBlast_CBE 94.4199% -99 - C1 -3VXD - UCDH_STRA3 -
6 PsiBlast_PDB 94.0499% -97 - C1 -3WUX 2.4 UCDH_STRA3
42 Fugue 74.9142% -80 - C1 -1VD5 - UGL_BACGL -
7 PsiBlast_PDB 73.3042% -79 - C1 -1VD5 - UGL_BACGL -
12 PsiBlast_PDB 72.6742% -80 - C1 -2AHF - UGL_BACGL -
8 PsiBlast_PDB 72.3342% -80 - C1 -2FUZ 2.8 UGL_BACGL
11 PsiBlast_PDB 72.3242% -79 - C1 -2FV1 3.7 UGL_BACGL
21 PsiBlast_CBE 72.2642% -79 - C1 -2AHG 4.7 UGL_BACGL
10 PsiBlast_PDB 72.0642% -79 - C1 -2FV0 4.9 UGL_BACGL
13 PsiBlast_PDB 72.0142% -78 - C1 -2AHG 6.1 UGL_BACGL
9 PsiBlast_PDB 72.0142% -78 - C1 -2D5J - UGL_BACGL -
24 HHSearch 71.7442% -79 - C1 -2AHF - UGL_BACGL -
20 PsiBlast_CBE 71.0542% -80 - C1 -2FV1 4.7 UGL_BACGL