@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1900: (2015-12-11 )
MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMRQEFEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDQSDFILGPTHEETFTTLVRDAVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHKDYEDLDVTYEDYRKAYEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAVTPNRTDLNRWLVLDKTIPSIDDIPEDVLEEIKVELSAWLVSGEDTIAYSTESSYAANLEMATNEYKPSTKAATFEEVTRVETPNCKSIDEVAGFLSIDENQTIKTLLFIADEQPVVALLVGNDQVNDVKLKNYLAADFLEPASEEQAKEIFGAGFGSLGPVNLPDSVKIIADRKVQDLANAVSGANQDGYHFTGVNPERDFTAEYVDIREVKEGEISPDGKGTLKFARGIEIGHIFKLGTRYSDSMGANILDENGRSNPIVMGCYGIGVSRILSAVIEQHARLFVNKTPKGAYRFAWGINFPEELAPFDVHLITVNVKDQESQDLTEKIEADLMLKGYEVLTDDRNERVGSKFSDSDLIGLPIRVTVGKKASEGIVEVKIKASGDTIEVHADNLIETLEILTKK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

P5A_B_25(2J3L)
SYP_ENTFA
[Raw transfer]




P5A_A_24(2J3L)
SYP_ENTFA
[Raw transfer]




ATP_A_3(2J3M)
SYP_ENTFA
[Raw transfer]




P5A_A_24(2J3L)
SYP_ENTFA
[Raw transfer]




P5A_A_24(2J3L)
SYP_ENTFA
[Raw transfer]




ATP_B_7(2J3M)
SYP_ENTFA
[Raw transfer]




66 Fugue 97.5164% -82 - C1 -2J3L 9.6 SYP_ENTFA
45 HHSearch 97.4564% -82 - C1 -2J3L 9.6 SYP_ENTFA
1 PsiBlast_PDB 95.4759% -83 - C1 -2J3L 9.6 SYP_ENTFA
2 PsiBlast_PDB 94.8359% -76 - C1 -2J3M 8.0 SYP_ENTFA
22 PsiBlast_CBE 94.7759% -80 - C1 -2J3L 9.3 SYP_ENTFA
21 PsiBlast_CBE 94.4859% -77 - C1 -2J3M 8.9 SYP_ENTFA
46 HHSearch 68.6839% -66 - C1 -2I4L - SYP_RHOPA -
47 HHSearch 61.3822% -62 * C1 *1NJ1 - SYP_METTH -
48 HHSearch 60.3324% -59 - C1 -1NJ8 - SYP_METJA -
53 HHSearch 58.7218% -51 - C1 -3A32 - SYT1_AERPE -
60 HHSearch 58.6619% -45 - C1 -2ZT5 - SYG_HUMAN -
49 HHSearch 58.4322% -54 - C1 -3IAL - ? -
50 HHSearch 57.1820% -53 - C1 -1QF6 - SYT_ECOLI -
54 HHSearch 57.1320% -53 - C1 -3UH0 - SYTM_YEAST -
71 Fugue 57.1120% -38 - C1 -3A32 - SYT1_AERPE -
52 HHSearch 56.6420% -64 - C1 -1HC7 - SYP_THET8 -
51 HHSearch 56.5721% -45 - C1 -1NYR - SYT_STAAW -
55 HHSearch 56.0120% -52 - C1 -1EVL - SYT_ECOLI -
74 Fugue 55.3620% -43 - C1 -4QEI - SYG_HUMAN -
68 Fugue 54.7821% -53 - C1 -1HC7 - SYP_THET8 -