@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1956: (2015-12-12 )
MNTWNELTVHVNREAEEAVSNLLIETGSQGVAISDSADYLGQEDRFGELYPEVEQSDMIAITAYYPDTLDIEAVKADLADRLANFEGFGLATGSVNLDSQELVEEDWADNWKKYYEPARITHDLTIVPSWTDYEAKAGEKIIKMDPGMAFGTGTHPTTKMSLFALEQVLRGGETVIDVGTGSGVLSIASSLLGAKDIYAYDLDDVAVRVAQENIDMNPGTENIHVAAGDLLKGVQQEVDVIVANILADILIHLTDDAYRLVKDEGYLIMSGIISEKWDMVRESAEKAGFFLETHMVQGEWNACVFKKTDDISGVIGG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SFG_A_2(2ZBR)
PRMA_THET8
[Raw transfer]



SAM_A_2(2ZBP)
PRMA_THET8
[Raw transfer]



SAM_C_3(2NXE)
PRMA_THET8
[Raw transfer]



SAH_A_3(3EGV)
PRMA_THET8
[Raw transfer]



SAH_A_9(3CJQ)
PRMA_THET8
[Raw transfer]



SAH_A_2(2ZBQ)
PRMA_THET8
[Raw transfer]



SAH_G_13(3CJQ)
PRMA_THET8
[Raw transfer]



4MM_B_9(3EGV)
PRMA_THET8
[Raw transfer]



GOL_A_4(3GRZ)
PRMA_LACDB
[Raw transfer]
78 HHSearch 98.8036%-108 - C1 -3GRZ 2.4 PRMA_LACDB
1 PsiBlast_PDB 95.2138%-104 * C1 *3GRZ - PRMA_LACDB -
21 PsiBlast_CBE 95.0438%-109 - C1 -3GRZ - PRMA_LACDB -
69 Fugue 94.9627%-100 - C1 -1UFK - PRMA_THET8 -
67 Fugue 92.0827% -96 - C1 -3EGV - PRMA_THET8 -
77 HHSearch 90.8632%-101 - C1 -2NXC - PRMA_THET8 -
3 PsiBlast_PDB 88.2131% -86 - C1 -2NXE 7.1 PRMA_THET8
2 PsiBlast_PDB 88.0431% -91 - C1 -1UFK - PRMA_THET8 -
5 PsiBlast_PDB 87.9531% -90 - C1 -2NXC - PRMA_THET8 -
8 PsiBlast_PDB 87.9031% -83 - C1 -2ZBP 6.3 PRMA_THET8
11 PsiBlast_PDB 87.2631% -87 - C1 -3CJT - PRMA_THET8 -
9 PsiBlast_PDB 87.2031% -84 - C1 -2ZBQ 5.6 PRMA_THET8
26 PsiBlast_CBE 87.1231% -89 - C1 -3CJT - PRMA_THET8 -
10 PsiBlast_PDB 87.0931% -93 - C1 -2ZBR 4.8 PRMA_THET8
7 PsiBlast_PDB 87.0631% -88 - C1 -3EGV 5.8 PRMA_THET8
28 PsiBlast_CBE 86.8731% -88 - C1 -3CJT - PRMA_THET8 -
22 PsiBlast_CBE 86.8131% -91 - C1 -3CJQ 5.5 PRMA_THET8
24 PsiBlast_CBE 86.6031% -88 - C1 -3CJT - PRMA_THET8 -
23 PsiBlast_CBE 86.1031% -89 - C1 -3CJT - PRMA_THET8 -
6 PsiBlast_PDB 85.9631% -89 - C1 -3CJQ 4.8 PRMA_THET8