@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs2024: (2015-12-12 )
MEVKDILKTVDHTLLATTATWPEIQTILDDAMAYETASACIPASYVKKAAEYVSGKLAICTVIGFPNGYSTTAAKVFECQDAIKNGADEIDMVINLTDVKNGDFDTVEEEIRQIKAACQDHILKVIVETCQLTKEELIELCGVVTRSGADFIKTSTGFSTAGATFEDVEVMAKYVGEGVKIKAAGGISSLEDAEKFIALGASRLGTSRIIKIVKNQKVEEGTY

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

HPD_A_5(1UB3)
DEOC_THET8
[Raw transfer]




HPD_B_6(1UB3)
DEOC_THET8
[Raw transfer]




HPD_A_5(1UB3)
DEOC_THET8
[Raw transfer]




HPD_D_8(1UB3)
DEOC_THET8
[Raw transfer]




HPD_C_7(1UB3)
DEOC_THET8
[Raw transfer]




GOL_A_7(3R13)
DEOC_THEMA
[Raw transfer]




CIT_A_3(3R12)
DEOC_THEMA
[Raw transfer]




CIT_A_3(3R12)
DEOC_THEMA
[Raw transfer]




UNL_D_12(3NG3)
DEOC_MYCA1
[Raw transfer]




UNL_A_6(3NG3)
DEOC_MYCA1
[Raw transfer]




UNL_B_7(3NG3)
DEOC_MYCA1
[Raw transfer]




UNL_A_4(3NDO)
?
[Raw transfer]




UNL_A_4(3NDO)
?
[Raw transfer]




UNL_B_7(3NDO)
?
[Raw transfer]




UNL_C_9(3NG3)
DEOC_MYCA1
[Raw transfer]




24 PsiBlast_CBE 95.2041%-104 - C4 -1UB3 2.9 DEOC_THET8
52 HHSearch 94.3940%-102 * C4 *1UB3 3.0 DEOC_THET8
2 PsiBlast_PDB 94.3141%-101 - C4 -1J2W - DEOC_THET8 -
26 PsiBlast_CBE 93.8241%-107 - C4 -1UB3 3.6 DEOC_THET8
3 PsiBlast_PDB 93.6241% -99 - C4 -1UB3 3.0 DEOC_THET8
50 HHSearch 93.1539%-110 - C4 -3OA3 - ? -
4 PsiBlast_PDB 93.0539%-111 - C4 -3OA3 - ? -
22 PsiBlast_CBE 93.0142%-111 - C4 -3NGJ - ? -
1 PsiBlast_PDB 92.6342%-110 - C4 -3NGJ - ? -
27 PsiBlast_CBE 92.6239%-106 - C4 -3OA3 - ? -
53 HHSearch 92.5341%-107 - C4 -3NGJ - ? -
23 PsiBlast_CBE 92.3642%-111 - C4 -3NGJ - ? -
25 PsiBlast_CBE 92.2141%-103 - C4 -1UB3 3.0 DEOC_THET8
21 PsiBlast_CBE 92.0742%-110 - C4 -3NGJ - ? -
5 PsiBlast_PDB 91.5140%-105 - C4 -3R12 2.3 DEOC_THEMA
6 PsiBlast_PDB 91.4940%-106 - C4 -3R13 3.4 DEOC_THEMA
51 HHSearch 90.7540% -97 - C4 -3R12 2.3 DEOC_THEMA
54 HHSearch 88.6437%-105 - C4 -3NDO 2.8 ?
56 HHSearch 88.5036%-102 - C4 -1MZH - DEOC_AQUAE -
8 PsiBlast_PDB 86.6037%-103 - C4 -1MZH - DEOC_AQUAE -
31 PsiBlast_CBE 86.4636% -99 - C4 -3NG3 3.2 DEOC_MYCA1
30 PsiBlast_CBE 86.1936%-100 - C4 -3NG3 3.3 DEOC_MYCA1
9 PsiBlast_PDB 85.6736% -98 - C4 -3NG3 2.9 DEOC_MYCA1
28 PsiBlast_CBE 85.2340%-106 - C4 -3NDO 2.8 ?
7 PsiBlast_PDB 84.8740%-106 - C4 -3NDO 2.8 ?
32 PsiBlast_CBE 84.6536% -92 - C4 -3NG3 2.8 DEOC_MYCA1