@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs2052: (2015-12-12 )
MSKIIELPDILANQIAAGEVVERPSSVVKELVENAIDAGSSQITIEVEESGLKKIQITDNGEGMTSEDAVLSLRRHATSKIKSQSDLFRIRTLGFRGEALPSIASISLMTIKTATEQGKQGTLLVAKGGNIEKQEVVSSPRGTKILVENLFFNTPARLKYMKSLQSELAHIIDIVNRLSLAHPEVAFTLINDGKEMTKTSGTGDLRQAIAGIYGLNTAKKMIEISNADLDFEISGYVSLPELTRANRNYITLLINGRYIKNFLLNRSILDGYGSKLMVGRFPIAVIDIQIDPYLADVNVHPTKQEVRISKERELMSLISTAISESLKQYDLIPDALENLAKTSTRSVDKPIQTSFSLKQPGLYYDRAKNDFFIGADTVSEPIANFTNLDKSDGSVDNDVKNSVNQGATQSPNIKYASRDQADSENFIHSQDYLSSKQSLNKLVEKLDSEESSTFPELEFFGQMHGTYLFAQGNGGLYIIDQHAAQERVKYEYYREKIGEVDNSLQQLLVPFLFEFSSSDFLQLQEKMSLLQDVGIFLEPYGNNTFILREHPIWMKEEEVESGIYEMCDMLLLTNEVSVKKYRAELAIMMSCKRSIKANHTLDDYSARHLLDQLAQCKNPYNCPHGRPVLVNFTKADMEKMFKRIQENHTSLRDLGKY

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_5(1B63)
MUTL_ECOLI
[Raw transfer]




ANP_A_4(1NHJ)
MUTL_ECOLI
[Raw transfer]




ANP_A_5(1B63)
MUTL_ECOLI
[Raw transfer]




ANP_A_5(1B63)
MUTL_ECOLI
[Raw transfer]




ANP_A_9(1NHH)
MUTL_ECOLI
[Raw transfer]




ANP_A_6(1NHI)
MUTL_ECOLI
[Raw transfer]




42 Fugue 85.7039% -75 - C1 -1B63 10.1 MUTL_ECOLI
4 PsiBlast_PDB 85.1139% -71 - C1 -1NHJ 10.2 MUTL_ECOLI
22 HHSearch 84.3039% -71 * C1 *1B63 10.1 MUTL_ECOLI
7 PsiBlast_PDB 82.5038% -70 - C1 -1B63 10.1 MUTL_ECOLI
9 PsiBlast_PDB 81.8438% -72 - C1 -1NHI 10.2 MUTL_ECOLI
8 PsiBlast_PDB 80.5738% -72 - C1 -1NHH 10.0 MUTL_ECOLI
24 HHSearch 77.2027% -75 - C1 -3H4L - PMS1_YEAST -
15 PsiBlast_PDB 77.1826% -75 - C1 -3H4L - PMS1_YEAST -
14 PsiBlast_PDB 75.5228% -90 - C1 -1EA6 - PMS2_HUMAN -
13 PsiBlast_PDB 72.3428% -90 - C1 -1H7U - PMS2_HUMAN -
3 PsiBlast_PDB 71.3938% -71 - C1 -5AKD - ? -
1 PsiBlast_PDB 69.8138% -68 - C1 -5AKB - ? -
2 PsiBlast_PDB 69.3938% -65 - C1 -5AKC - ? -
10 PsiBlast_PDB 68.1647%-105 - C2 -3GAB - MUTL_BACSU -
5 PsiBlast_PDB 66.8838% -24 - C- -1B62 - MUTL_ECOLI -
6 PsiBlast_PDB 66.5838% -69 - C1 -1BKN - MUTL_ECOLI -
25 HHSearch 65.0447%-103 - C2 -3KDG - MUTL_BACSU -
11 PsiBlast_PDB 65.0247%-101 - C2 -3KDG - MUTL_BACSU -
21 PsiBlast_CBE 64.1547%-101 - C2 -3KDK - -
45 Fugue 63.9545%-101 * C2 *3KDG - MUTL_BACSU -