@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs2054: (2015-12-12 )
MAKPTISPGMQQYLDIKENYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNAEKPIPMAGVPYHSAQQYIDVLVELGYKVAIAEQMEDPKKAVGVVKREVVQVVTPGTVVESTKPDSANNFLVAIDSQDQQTFGLAYMDVSTGEFQATLLTDFESVRSEILNLKAREIVVGYQLTDEKNHLLTKQMNLLLSYEDERLNDIHLIDEQLTDLEISAAEKLLQYVHRTQKRELSHLQKVVHYEIKDYLQMSYATKNSLDLLENARTSKKHGSLYWLLDETKTAMGTRMLRTWIDRPLVSMNRIKERQDIIQVFLDYFFERNDLTESLKGVYDIERLASRVSFGKANPKDLLQLGQTLSQIPRIKMILQSFNQPELDIIVNKIDTMPELESLINTAIAPEAQATITEGNIIKSGFDKQLDNYRTVMREGTGWIADIEAKERAASGIGTLKIDYNKKDGYYFHVTNSNLSLVPEHFFRKATLKNSERYGTAELAKIEGEMLEAREQSSNLEYDIFMRVRAQVESYIKRLQELAKTIATVDVLQSLAVVAENYHYVRPKFNDQHQIKIKNGRHATVEKVMGVQEYIPNSIYFDSQTDIQLITGPNMSGKSTYMRQLALTVIMAQMGGFVSADEVDLPVFDAIFTRIGAADDLISGQSTFMVEMMEANQAVKRASDKSLILFDELGRGTATYDGMALAQSIIEYIHDRVRAKTMFATHYHELTDLSEQLTRLVNVHVATLERDGEVTFLHKIESGPADKSYGIHVAKIAGLPIDLLDRATDILSQLEADAVQLIVSPSQEAVTADLNEELDSEKQQGQLSLFEEPSNAGRVIEELEAIDIMNLTPMQAMNAIFDLKKLL

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_E_3(3K0S)
MUTS_ECOLI
[Raw transfer]

-

NACID_C_1(1EWQ)
MUTS_THEAQ
[Raw transfer]

-

NACID_E_1(1WBB)
MUTS_ECOLI
[Raw transfer]

-

NACID_E_1(1WBB)
MUTS_ECOLI
[Raw transfer]

-

NACID_F_4(3K0S)
MUTS_ECOLI
[Raw transfer]

-

NACID_E_1(1WB9)
MUTS_ECOLI
[Raw transfer]

-

NACID_C_1(1NNE)
MUTS_THEAQ
[Raw transfer]

-

NACID_E_1(1WB9)
MUTS_ECOLI
[Raw transfer]

-

NACID_F_4(1E3M)
MUTS_ECOLI
[Raw transfer]

-

NACID_E_1(1WBD)
MUTS_ECOLI
[Raw transfer]

-

NACID_E_1(1W7A)
MUTS_ECOLI
[Raw transfer]

-

NACID_E_1(1OH8)
MUTS_ECOLI
[Raw transfer]

-

CHAIN_E_3(2WTU)
MUTS_ECOLI
[Raw transfer]

-

NACID_E_1(1OH5)
MUTS_ECOLI
[Raw transfer]

-

NACID_E_1(1OH6)
MUTS_ECOLI
[Raw transfer]

-

NACID_F_6(3ZLJ)
MUTS_ECOLI
[Raw transfer]

-

NACID_F_2(1OH7)
MUTS_ECOLI
[Raw transfer]

-

NACID_E_1(1WB9)
MUTS_ECOLI
[Raw transfer]

-

NACID_E_1(1OH7)
MUTS_ECOLI
[Raw transfer]

-

NACID_E_1(1WBD)
MUTS_ECOLI
[Raw transfer]

-

NACID_F_2(1OH5)
MUTS_ECOLI
[Raw transfer]

-

CHAIN_F_4(2WTU)
MUTS_ECOLI
[Raw transfer]

-

NACID_E_5(3ZLJ)
MUTS_ECOLI
[Raw transfer]

-

NACID_F_2(1OH8)
MUTS_ECOLI
[Raw transfer]

-

NACID_F_2(1OH6)
MUTS_ECOLI
[Raw transfer]

-

44 HHSearch 97.3037% -86 - C3 -1WB9 8.9 MUTS_ECOLI
30 PsiBlast_CBE 96.2636% -84 - C3 -1WB9 3.7 MUTS_ECOLI
8 PsiBlast_PDB 96.1536% -83 - C3 -3K0S 7.3 MUTS_ECOLI
7 PsiBlast_PDB 95.9736% -83 - C3 -1WBD 7.9 MUTS_ECOLI
47 HHSearch 95.8038% -79 - C3 -1EWQ 6.6 MUTS_THEAQ
14 PsiBlast_PDB 95.6935% -81 - C3 -1E3M 7.0 MUTS_ECOLI
11 PsiBlast_PDB 95.6837% -88 - C3 -1NNE 5.4 MUTS_THEAQ
23 PsiBlast_CBE 95.6536% -83 - C3 -1W7A 3.2 MUTS_ECOLI
3 PsiBlast_PDB 95.4636% -83 - C3 -1OH7 6.3 MUTS_ECOLI
2 PsiBlast_PDB 95.4636% -82 - C3 -1OH6 6.9 MUTS_ECOLI
9 PsiBlast_PDB 95.4236% -83 - C3 -1WB9 8.9 MUTS_ECOLI
4 PsiBlast_PDB 95.3736% -79 - C3 -1OH8 7.4 MUTS_ECOLI
28 PsiBlast_CBE 95.3336% -84 - C3 -1WBD 2.3 MUTS_ECOLI
5 PsiBlast_PDB 95.3236% -84 - C3 -2WTU 6.9 MUTS_ECOLI
29 PsiBlast_CBE 95.2336% -83 - C3 -3K0S 3.8 MUTS_ECOLI
1 PsiBlast_PDB 95.2036% -84 - C3 -1OH5 4.9 MUTS_ECOLI
6 PsiBlast_PDB 95.0536% -82 - C3 -3ZLJ 6.6 MUTS_ECOLI
32 PsiBlast_CBE 94.8037% -83 - C3 -1NNE - MUTS_THEAQ -
24 PsiBlast_CBE 94.6736% -85 - C3 -1OH8 3.2 MUTS_ECOLI
25 PsiBlast_CBE 94.6436% -85 - C3 -1OH7 3.9 MUTS_ECOLI
10 PsiBlast_PDB 94.6436% -85 - C3 -1WBB 8.9 MUTS_ECOLI
26 PsiBlast_CBE 94.4536% -84 - C3 -1OH6 3.5 MUTS_ECOLI
31 PsiBlast_CBE 94.4336% -85 - C3 -1WBB 3.6 MUTS_ECOLI
27 PsiBlast_CBE 93.7636% -86 - C3 -1OH5 3.4 MUTS_ECOLI
21 PsiBlast_CBE 93.0536% -83 - C3 -3ZLJ 3.5 MUTS_ECOLI
22 PsiBlast_CBE 90.8636% -81 - C3 -2WTU 3.3 MUTS_ECOLI