@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs2118: (2015-12-13 )
MSNWDTKFLKKGFTFDDVLLIPAESHVLPNEVDMKTKLADNLTLNIPIITAAMDTVTDSKMAIAIARAGGLGIIHKNMSIVDQAEEVRKVKRSENGVIIDPFFLTPDNTVSEAEELMQNYRISGVPIVETLENRKLVGIITNRDMRFISDYKQLISEHMTSQNLVTAPIGTDLETAERILHEHRIEKLPLVDDEGRLSGLITIKDIEKVIEFPKAAKDEFGRLLVAGAVGVTSDTFERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQITAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEAPGETEIFQGRKFKTYRGMGSIAAMKKGSSDRYFQGSVNEANKLVPEGIEGRVAYKGSVADIVFQMLGGIRSGMGYVGAANIKELHDNAQFVEMSGAGLKESHPHDVQITNEAPNYSVH

Atome Classification :

(41 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_A_4(4X3Z)
?
[Raw transfer]



NAD_B_8(4X3Z)
?
[Raw transfer]



NAJ_A_4(4QNE)
?
[Raw transfer]



NAJ_B_7(4QNE)
?
[Raw transfer]



IMP_A_3(5AHM)
?
[Raw transfer]



IMP_B_6(4FO4)
?
[Raw transfer]



IMP_A_2(4FXS)
?
[Raw transfer]



IMP_A_3(4FO4)
?
[Raw transfer]



IMP_A_5(4IX2)
?
[Raw transfer]



IMP_C_8(4IX2)
?
[Raw transfer]



XMP_A_3(2CU0)
IMDH_PYRHO
[Raw transfer]



IMP_B_6(4IX2)
?
[Raw transfer]



IMP_D_11(4IX2)
?
[Raw transfer]



XMP_A_3(2CU0)
IMDH_PYRHO
[Raw transfer]



XMP_A_2(4QQ3)
?
[Raw transfer]



Q21_A_6(4MY8)
?
[Raw transfer]



Q21_B_18(4MY8)
?
[Raw transfer]



Q21_B_13(4MY8)
?
[Raw transfer]



XMP_A_3(3TSD)
?
[Raw transfer]



2EY_B_8(4MYA)
?
[Raw transfer]



RVP_A_4(1ME8)
IMDH_TRIFO
[Raw transfer]



2EY_A_4(4MYA)
?
[Raw transfer]



IMP_A_3(3USB)
?
[Raw transfer]



IMP_A_3(3USB)
?
[Raw transfer]



39H_A_6(4QM1)
?
[Raw transfer]



IMP_A_2(5AHN)
?
[Raw transfer]



39H_C_9(4QM1)
?
[Raw transfer]



39H_B_8(4QM1)
?
[Raw transfer]



39H_C_10(4QM1)
?
[Raw transfer]
115 HHSearch 97.9892%-118 - C- -1ZFJ - IMDH_STRPY -
1 PsiBlast_PDB 97.4890%-118 - C- -1ZFJ - IMDH_STRPY -
2 PsiBlast_PDB 87.4168% -88 - C3 -3TSB - ? -
6 PsiBlast_PDB 86.9154% -93 - C3 -4FXS 6.7 ?
116 HHSearch 86.7967%-102 - C3 -3USB 4.7 ?
4 PsiBlast_PDB 86.2065%-102 - C3 -3USB 4.7 ?
3 PsiBlast_PDB 85.6468% -97 - C3 -3TSD 6.0 ?
8 PsiBlast_PDB 83.2955% -94 - C3 -4AVF - ? -
7 PsiBlast_PDB 83.0155%-100 - C3 -4DQW - ? -
10 PsiBlast_PDB 82.6154% -99 - C3 -5AHN 5.0 ?
9 PsiBlast_PDB 82.0755% -93 - C3 -3ZFH - ? -
118 HHSearch 81.5852% -86 - C3 -2CU0 6.7 IMDH_PYRHO
11 PsiBlast_PDB 80.6951% -85 - C3 -2CU0 6.7 IMDH_PYRHO
21 PsiBlast_CBE 80.0955%-103 - C3 -4DQW - ? -
119 HHSearch 79.9758% -93 - C3 -1VRD - ? -
5 PsiBlast_PDB 79.0458% -93 - C3 -1VRD - ? -
121 HHSearch 75.7153% -97 - C3 -1EEP - IMDH_BORBU -
117 HHSearch 74.2733% -80 - C3 -1ME8 6.6 IMDH_TRIFO
81 PsiBlast_CBE 74.1440% -91 - C3 -4AF0 - ? -
82 PsiBlast_CBE 74.1039% -89 - C3 -4AF0 - ? -
52 PsiBlast_CBE 66.6765% -90 - C3 -4X3Z 5.0 ?
19 PsiBlast_PDB 66.6365% -89 - C3 -4FO4 6.0 ?
57 PsiBlast_CBE 66.2965% -95 - C3 -4IX2 5.6 ?
60 PsiBlast_CBE 66.1565% -88 - C3 -4FO4 6.3 ?
58 PsiBlast_CBE 66.1365% -93 - C3 -4IX2 6.1 ?
34 PsiBlast_CBE 66.0668% -97 - C3 -4MYA 5.2 ?
53 PsiBlast_CBE 66.0165% -88 - C3 -4X3Z 5.6 ?
59 PsiBlast_CBE 65.7765% -89 - C3 -4IX2 4.1 ?
56 PsiBlast_CBE 65.7365% -86 - C3 -4QNE 5.8 ?
26 PsiBlast_CBE 65.4168% -98 - C3 -4QM1 5.1 ?
15 PsiBlast_PDB 65.3368% -92 - C3 -4MYA 5.1 ?
20 PsiBlast_PDB 65.1165% -92 - C3 -4IX2 5.2 ?
13 PsiBlast_PDB 64.5868% -93 - C3 -4MY8 5.6 ?
83 PsiBlast_CBE 64.3660% -82 - C3 -5AHM 6.4 ?
55 PsiBlast_CBE 64.3565% -88 - C3 -4QNE 5.4 ?
24 PsiBlast_CBE 64.2568% -94 - C3 -4QM1 5.1 ?
43 PsiBlast_CBE 63.8368% -99 - C3 -4MY8 5.4 ?
44 PsiBlast_CBE 63.5568% -95 - C3 -4MY8 5.5 ?
18 PsiBlast_PDB 63.4768% -96 - C3 -4QM1 4.8 ?
25 PsiBlast_CBE 63.3068% -97 - C3 -4QM1 5.0 ?
54 PsiBlast_CBE 62.7165%-102 - C3 -4QQ3 6.9 ?