@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs2124: (2015-12-13 )
MTQVFQGRSFLAEKDFSREEFEYLIDFSAHLKDLKKRGVPHHYLEGKNIALLFEKTSTRTRAAFTTAAIDLGAHPEYLGANDIQLGKKESTEDTAKVLGRMFDGIEFRGFSQRMVEELAEFSGVPVWNGLTDEWHPTQMLADYLTIKENFGKLEGITLVYCGDGRNNVANSLLVAGTLMGVNVHIFSPKELFPAEEIVKLAEEYAKESGAHVLVTDNVDEAVKGADVFYTDVWVSMGEEDKFKERVELLQPYQVNMELIKKANNDNLIFLHCLPAFHDTNTVYGKDVAEKFGVKEMEVTDEVFRSKYARHFDQAENRMHTIKAVMAATLGNLFIPKV

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PSQ_F_6(1DUV)
OTC1_ECOLI
[Raw transfer]




PSQ_D_4(1DUV)
OTC1_ECOLI
[Raw transfer]




PSQ_E_5(1DUV)
OTC1_ECOLI
[Raw transfer]




PAO_D_4(1OTH)
OTC_HUMAN
[Raw transfer]




PAO_D_4(1OTH)
OTC_HUMAN
[Raw transfer]




CIR_C_16(4JQO)
OTC_VIBVU
[Raw transfer]




CIR_B_11(4JQO)
OTC_VIBVU
[Raw transfer]




CIR_A_5(4JQO)
OTC_VIBVU
[Raw transfer]




CP_A_4(4JFR)
OTC_VIBVU
[Raw transfer]




CP_G_7(1C9Y)
OTC_HUMAN
[Raw transfer]




CP_A_5(4H31)
OTC_VIBVU
[Raw transfer]




CP_C_13(2I6U)
OTC_MYCTU
[Raw transfer]




CP_B_6(4JFR)
OTC_VIBVU
[Raw transfer]




CP_B_11(2I6U)
OTC_MYCTU
[Raw transfer]




CP_A_4(4NF2)
OTC_BACAN
[Raw transfer]




CP_B_10(4NF2)
OTC_BACAN
[Raw transfer]




CP_A_9(2I6U)
OTC_MYCTU
[Raw transfer]




CP_C_12(4NF2)
OTC_BACAN
[Raw transfer]




CP_D_4(1EP9)
OTC_HUMAN
[Raw transfer]




CP_A_9(2I6U)
OTC_MYCTU
[Raw transfer]




CP_J_10(1FVO)
OTC_HUMAN
[Raw transfer]




PA9_A_2(3M4N)
AOTC_XANCP
[Raw transfer]




PA9_A_2(3M5C)
AOTC_XANCP
[Raw transfer]




PA9_A_2(3M5D)
AOTC_XANCP
[Raw transfer]




CP_G_7(1FVO)
OTC_HUMAN
[Raw transfer]




ARG_A_6(4JHX)
OTC_VIBVU
[Raw transfer]




PE5_B_26(4H31)
OTC_VIBVU
[Raw transfer]




22 PsiBlast_CBE 98.9972%-103 - C8 -2W37 - OTCC_LACHI -
1 PsiBlast_PDB 98.6972%-104 - C8 -2W37 - OTCC_LACHI -
21 PsiBlast_CBE 98.3272%-100 - C8 -2W37 - OTCC_LACHI -
101 HHSearch 97.7373%-101 - C8 -2W37 - OTCC_LACHI -
2 PsiBlast_PDB 91.5955% -99 - C8 -3UPD - OTC_VIBVU -
27 PsiBlast_CBE 90.9655% -98 - C8 -4JHX - OTC_VIBVU -
28 PsiBlast_CBE 90.7455%-100 - C8 -4JHX - OTC_VIBVU -
23 PsiBlast_CBE 90.7155%-100 - C8 -4KWT - OTC_VIBVU -
29 PsiBlast_CBE 90.4255% -99 - C8 -4JFR - OTC_VIBVU -
5 PsiBlast_PDB 90.1355% -95 - C8 -4JHX 2.8 OTC_VIBVU
24 PsiBlast_CBE 90.0955% -99 - C8 -4KWT - OTC_VIBVU -
4 PsiBlast_PDB 89.8155% -94 - C8 -4JFR 4.7 OTC_VIBVU
32 PsiBlast_CBE 89.6055% -94 - C8 -4H31 2.4 OTC_VIBVU
25 PsiBlast_CBE 89.5355% -93 - C8 -4JQO 3.7 OTC_VIBVU
30 PsiBlast_CBE 89.4755% -95 - C8 -4JFR 4.6 OTC_VIBVU
26 PsiBlast_CBE 89.3155% -93 - C8 -4JQO 3.7 OTC_VIBVU
6 PsiBlast_PDB 89.2555% -95 - C8 -4JQO 3.8 OTC_VIBVU
31 PsiBlast_CBE 89.0555% -92 - C8 -4H31 - OTC_VIBVU -
3 PsiBlast_PDB 89.0055% -95 - C8 -4H31 5.0 OTC_VIBVU
7 PsiBlast_PDB 86.7652% -98 - C8 -1DXH - OTCC_PSEAE -
34 PsiBlast_CBE 85.9652% -92 - C8 -1DUV 6.8 OTC1_ECOLI
10 PsiBlast_PDB 85.3952% -94 - C8 -1DUV 6.9 OTC1_ECOLI
33 PsiBlast_CBE 85.3652% -91 - C8 -1DUV 6.7 OTC1_ECOLI
105 HHSearch 80.6642% -95 - C8 -1OTH 7.4 OTC_HUMAN
19 PsiBlast_PDB 80.0041% -95 - C8 -1EP9 5.0 OTC_HUMAN
17 PsiBlast_PDB 79.9741% -95 - C8 -1OTH 7.4 OTC_HUMAN
18 PsiBlast_PDB 79.9341% -95 - C8 -1C9Y 4.7 OTC_HUMAN
43 PsiBlast_CBE 79.6341% -97 - C8 -1FVO 4.0 OTC_HUMAN
20 PsiBlast_PDB 79.4941% -94 - C8 -1FVO 3.8 OTC_HUMAN
45 PsiBlast_CBE 78.5741% -98 - C8 -4NF2 5.0 OTC_BACAN
47 PsiBlast_CBE 78.4441% -98 - C8 -4NF2 4.9 OTC_BACAN
46 PsiBlast_CBE 77.8741% -96 - C8 -4NF2 4.9 OTC_BACAN
53 PsiBlast_CBE 75.1438% -86 - C8 -2I6U 4.4 OTC_MYCTU
52 PsiBlast_CBE 74.7438% -87 - C8 -2I6U 4.3 OTC_MYCTU
107 HHSearch 74.6439% -88 - C8 -2I6U 4.1 OTC_MYCTU
54 PsiBlast_CBE 74.1338% -85 - C8 -2I6U 4.1 OTC_MYCTU
90 PsiBlast_CBE 67.2931% -72 - C8 -3M5C 5.7 AOTC_XANCP
91 PsiBlast_CBE 67.1331% -71 - C8 -3M5D 5.0 AOTC_XANCP
92 PsiBlast_CBE 66.8031% -70 - C8 -3M4N 5.8 AOTC_XANCP