@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu00060: (2016-06-01 )
MEQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNSKGLHHLVWEIVDNSIDEALAGYCTDINIQIEKDNSITVVDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGVGASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIGETDHTGTTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEYAYNDKELEELLKTLPQTPKPGLQRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEMLMGDKVEPRRNFIEANARYVKNLDI

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




DOO_A_2(4K4O)
GYRB_ENTFA
[Raw transfer]




920_A_2(4KSG)
GYRB_ENTFA
[Raw transfer]




DOO_A_2(4K4O)
GYRB_ENTFA
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_7(1S16)
PARE_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_2(4WUB)
GYRB_ECOLI
[Raw transfer]




1A0_A_2(4HXW)
GYRB_ENTFA
[Raw transfer]




ANP_B_7(1EI1)
GYRB_ECOLI
[Raw transfer]




RLI_A_3(4DUH)
GYRB_ECOLI
[Raw transfer]




RLI_B_4(4DUH)
GYRB_ECOLI
[Raw transfer]




RLI_A_3(4DUH)
GYRB_ECOLI
[Raw transfer]




NOV_A_3(1KIJ)
GYRB_THET8
[Raw transfer]




NOV_C_7(4URO)
GYRB_STAAU
[Raw transfer]




NOV_A_3(1KIJ)
GYRB_THET8
[Raw transfer]




NOV_D_8(4URO)
GYRB_STAAU
[Raw transfer]




1EU_A_3(3FV5)
PARE_ECOLI
[Raw transfer]




EVO_A_3(5CPH)
?
[Raw transfer]




NOV_A_5(4URO)
GYRB_STAAU
[Raw transfer]




NOV_B_4(1KIJ)
GYRB_THET8
[Raw transfer]




NOV_B_2(1AJ6)
GYRB_ECOLI
[Raw transfer]




4S4_A_2(4ZVI)
GYRB_ECOLI
[Raw transfer]




121 HHSearch 89.3257% -86 - C4 -4I3H - ? -
2 PsiBlast_PDB 88.8755% -85 - C4 -4I3H - ? -
1 PsiBlast_PDB 86.8955% -88 - C4 -4JUO - PARE_STRPN -
130 HHSearch 65.5656% -62 - C3 -4WUB 10.1 GYRB_ECOLI
3 PsiBlast_PDB 65.0955% -63 - C3 -4XTJ - GYRB_ECOLI -
41 PsiBlast_CBE 64.7747% -68 - C3 -3ZKB - GYRB_MYCTU -
29 PsiBlast_CBE 64.6847% -67 - C3 -3ZKD - GYRB_MYCTU -
112 Fugue 64.5755% -61 - C3 -1EI1 8.3 GYRB_ECOLI
6 PsiBlast_PDB 64.4455% -62 - C3 -4WUD - GYRB_ECOLI -
111 Fugue 64.3055% -61 - C3 -1EI1 8.3 GYRB_ECOLI
4 PsiBlast_PDB 64.2955% -61 - C3 -4WUB - GYRB_ECOLI -
11 PsiBlast_PDB 64.2555% -72 - C3 -4ZVI 5.4 GYRB_ECOLI
7 PsiBlast_PDB 64.2155% -65 - C3 -4PRV - GYRB_ECOLI -
5 PsiBlast_PDB 64.1755% -63 - C3 -4WUC - GYRB_ECOLI -
12 PsiBlast_PDB 64.0347% -69 - C3 -3ZKB - GYRB_MYCTU -
8 PsiBlast_PDB 63.7855% -65 - C3 -4PRX - GYRB_ECOLI -
24 PsiBlast_CBE 63.7647% -65 - C3 -3ZKD - GYRB_MYCTU -
127 HHSearch 63.6850% -64 - C3 -3ZKB - GYRB_MYCTU -
47 PsiBlast_CBE 63.4846% -70 - C3 -1KIJ 8.0 GYRB_THET8
43 PsiBlast_CBE 62.9047% -68 - C3 -3ZKB - GYRB_MYCTU -
21 PsiBlast_CBE 62.6055% -60 - C3 -1EI1 8.4 GYRB_ECOLI
129 HHSearch 62.5647% -69 - C3 -1KIJ 7.0 GYRB_THET8
15 PsiBlast_PDB 62.3546% -70 - C3 -1KIJ 7.0 GYRB_THET8
133 HHSearch 56.6836% -65 - C3 -1S16 9.8 PARE_ECOLI
104 PsiBlast_CBE 47.8873% -75 - C3 -4K4O 7.6 GYRB_ENTFA
105 PsiBlast_CBE 47.7973% -78 - C3 -4HXW 7.1 GYRB_ENTFA
103 PsiBlast_CBE 47.6473% -73 - C3 -4KSG 7.8 GYRB_ENTFA
108 PsiBlast_CBE 47.5159% -78 - C3 -1AJ6 5.7 GYRB_ECOLI
143 HHSearch 47.2073% -75 - C3 -4K4O 7.6 GYRB_ENTFA
109 PsiBlast_CBE 47.1168% -73 - C3 -4URO 6.2 GYRB_STAAU
140 HHSearch 46.8868% -73 * C3 *4URO 6.4 GYRB_STAAU
106 PsiBlast_CBE 46.2560% -77 - C3 -4DUH 6.9 GYRB_ECOLI
141 HHSearch 46.1261% -73 - C3 -4DUH 6.4 GYRB_ECOLI
107 PsiBlast_CBE 46.0160% -72 - C3 -4DUH 6.4 GYRB_ECOLI
110 PsiBlast_CBE 45.8468% -72 - C3 -4URO 5.9 GYRB_STAAU
144 HHSearch 45.0861% -64 - C3 -5CPH 3.6 ?
116 Fugue 43.6053% -67 - C3 -1EI1 7.5 GYRB_ECOLI
145 HHSearch 41.9845% -75 - C3 -3FV5 5.9 PARE_ECOLI
115 Fugue 32.5550% -35 - C3 -1EI1 Error GYRB_ECOLI